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[189345_at] acid phosphatase

Description F07H5.9 /REP_DB=WormBase Gene ID /WP=CE03158 /TR=Q19175 /GB=CAA92657.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=acid phosphatase
Cluster 6grp_high1_10_10 > 32      6grp_total > 21      4grp_total > 60      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 508
1 2 3 4 range
A 372.8
(3)
P 		369.6
(2.9)
P 		361.7
(2.8)
P 		15.5
(-3)
A 		357
B 400.6
(2.3)
P 		444.8
(3)
P 		443.7
(3)
P 		66.6
(-3)
A 		378
C 451.8
(2.1)
P 		420.6
(1.8)
P 		523
(3)
P 		23.3
(-3)
A 		500
avr 408.4
(2.5) 		411.7
(2.5) 		442.8
(3) 		35.1
(-3) 		408

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 459
1 2 3 4 5 6 range
A 150
(-1.7)
P 		501.7
(3)
P 		429.6
(2)
P 		231.3
(-0.6)
P 		136.4
(-1.9)
P 		50.4
(-3)
A 		451
B 266.9
(-0.1)
P 		507.4
(3)
P 		481.7
(2.7)
P 		242.5
(-0.5)
P 		119.6
(-2.1)
P 		48.9
(-3)
P 		459
C 252.2
(-0.5)
P 		501.7
(3)
P 		380.6
(1.3)
P 		280.8
(-0.1)
P 		84.6
(-2.9)
P 		77.9
(-3)
P 		424
avr 223
(-0.8) 		503.6
(3) 		430.6
(2) 		251.5
(-0.4) 		113.5
(-2.3) 		59.1
(-3) 		445
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 135.7
(3)
P 		80.2
(0.5)
P 		94.6
(1.2)
P 		2.3
(-3)
A 		133
B 127.8
(3)
P 		109.9
(2.1)
P 		102.8
(1.7)
P 		14.2
(-3)
A 		114
C 149.5
(1.9)
P 		120.9
(0.9)
P 		182.3
(3)
P 		3.9
(-3)
A 		178
avr 137.7
(3) 		103.7
(1.4) 		126.6
(2.5) 		6.8
(-3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 27.7
(-2.4)
P 		178.4
(3)
P 		93.6
(-0.1)
P 		58.7
(-1.3)
P 		41.2
(-2)
P 		12.3
(-3)
A 		166
B 92.9
(-0)
P 		168.9
(3)
P 		117
(0.9)
P 		64.2
(-1.2)
P 		48.6
(-1.8)
P 		18.2
(-3)
P 		151
C 93.5
(0.2)
P 		153.1
(3)
P 		96.9
(0.3)
P 		56.5
(-1.6)
P 		27.4
(-2.9)
P 		26.1
(-3)
P 		127
avr 71.4
(-0.9) 		166.8
(3) 		102.5
(0.4) 		59.8
(-1.3) 		39.1
(-2.2) 		18.9
(-3) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189345_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3307
Sequence Type Exemplar sequence
Representative Public ID F07H5.9 NCBI
Target Description F07H5.9 /REP_DB=WormBase Gene ID /WP=CE03158 /TR=Q19175 /GB=CAA92657.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=acid phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063474(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063474 NCBI Caenorhabditis elegans F07H5.9 (F07H5.9) mRNA, complete cds. 11/11 None
SNAP00000026209 ENSEMBL cdna:SNAP chromosome:CEL140:II:8801892:8806819:-1 9/11 None
GENEFINDER00000026219 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8804817:8806790:-1 11/11 None
F07H5.9 ENSEMBL cdna:known chromosome:CEL140:II:8804817:8806819:-1 gene:F07H5.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8804813-8806787(-) 100.0 100.0
Public Domain and Genome References
Gene Title acid phosphatase
Ensembl F07H5.9
Entrez Gene 184165 Entrez gene
SwissProt Q19175 EMBL-EBI
WormBase CE35850 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3993 acid phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92657 Hypothetical protein F07H5.9 [Caenorhabditis elegans] ref|NP_495875.2| F07H5.9 [Caenorhabditis elegans] 0.0
blast CAE59737 Hypothetical protein CBG03178 [Caenorhabditis briggsae] 0.0
blast CAE59070 Hypothetical protein CBG02356 [Caenorhabditis briggsae] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 2.3E-20
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 5.6E-14
Sequence
Target Sequence 
>C. ELEGANS:189345_AT
atattggccttgagcttctgaaagtacgatccggacctcttatgaatgatatgatggata
gaattaataagaaaagtgattgtacatatggaaaaaatacacaagggtgtgattggataa
atggactcaagtacttcgtttattcagctcacgatgagaccgtatacgcagtgctagtag
ctcttggcatcgaacgatttgctattaaacctcacggatatccactttattccgctgccg
tatcggttgaatattggagaaatactactgataacgctgactattttaagctggtttacc
acaaacaatctggagatgactttactgtgatgacgaaggagattactggatgtggaggag
attactgttcaatgaatgtgttgaatcaaattgcaaacaatttaaaaccagatcaaccta
ttgatcaatggtgtctcgttaccggatcctcgaactcttcttcacttttatttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTGGCCTTGAGCTTCTGAAAGT 83 19 857 Antisense
AGTACGATCCGGACCTCTTATGAAT 474 61 879 Antisense
CAAGTACTTCGTTTATTCAGCTCAC 579 183 984 Antisense
AGCTCACGATGAGACCGTATACGCA 676 77 1002 Antisense
CGTATACGCAGTGCTAGTAGCTCTT 126 247 1017 Antisense
AGTAGCTCTTGGCATCGAACGATTT 215 63 1032 Antisense
ACGATTTGCTATTAAACCTCACGGA 579 91 1050 Antisense
ACCTCACGGATATCCACTTTATTCC 544 87 1065 Antisense
TTTATTCCGCTGCCGTATCGGTTGA 80 675 1082 Antisense
TCAATGGTGTCTCGTTACCGGATCC 604 631 1281 Antisense
GAACTCTTCTTCACTTTTATTTTTG 587 347 1308 Antisense
Sequence Source Affymetrix Proprietary Database