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[189341_s_at] carboxylesterase

Description ZC376.3 /REP_DB=WormBase Gene ID /WP=CE15197 /TR=Q23267 /GB=CAB03277.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=carboxylesterase
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 83      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 82      6grp_total > 74      4grp_total > 61      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 263.5
(3)
P 		239.8
(1.9)
P 		244.9
(2.1)
P 		135.5
(-3)
P 		128
B 227.9
(1.4)
P 		131.7
(-3)
P 		261.7
(3)
P 		194.2
(-0.1)
P 		130
C 295.8
(3)
P 		272.6
(2.3)
P 		202.9
(0)
P 		108.3
(-3)
P 		188
avr 262.4
(3) 		214.7
(0.5) 		236.5
(1.7) 		146
(-3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 395
1 2 3 4 5 6 range
A 132.8
(-3)
P 		239.1
(-1.3)
P 		417.8
(1.6)
P 		505.5
(3)
P 		383.9
(1)
P 		455
(2.2)
P 		373
B 206.4
(-3)
P 		213.6
(-2.9)
P 		527.7
(3)
P 		484.1
(2.2)
P 		453.3
(1.6)
P 		427
(1.1)
P 		321
C 170.1
(-3)
P 		240.4
(-1.6)
P 		468.1
(3)
P 		409.2
(1.8)
P 		354
(0.7)
P 		439.3
(2.4)
P 		298
avr 169.8
(-3) 		231
(-1.8) 		471.2
(3) 		466.3
(2.9) 		397.1
(1.5) 		440.4
(2.4) 		301
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 95.9
(3)
P 		52
(-0.5)
P 		64
(0.5)
P 		19.8
(-3)
P 		76
B 72.7
(3)
P 		32.5
(-3)
P 		60.7
(1.2)
P 		41.4
(-1.7)
P 		40
C 97.9
(3)
P 		78.4
(1.5)
P 		70.7
(0.9)
P 		18.3
(-3)
P 		80
avr 88.8
(3) 		54.3
(-0.3) 		65.1
(0.7) 		26.5
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 24.5
(-3)
P 		85
(0.5)
P 		91
(0.8)
P 		128.2
(3)
P 		115.8
(2.3)
P 		110.8
(2)
P 		104
B 71.8
(-3)
P 		71.1
(-3)
P 		128.1
(0)
P 		128.2
(0)
P 		184.2
(3)
P 		159.2
(1.7)
P 		113
C 63.1
(-3)
P 		73.4
(-2.3)
P 		119.2
(1)
P 		82.3
(-1.6)
P 		114.5
(0.7)
P 		147.1
(3)
P 		84
avr 53.1
(-3) 		76.5
(-1.4) 		112.8
(1.2) 		112.9
(1.2) 		138.2
(2.9) 		139
(3) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189341_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14094
Sequence Type Exemplar sequence
Representative Public ID ZC376.3 NCBI
Target Description ZC376.3 /REP_DB=WormBase Gene ID /WP=CE15197 /TR=Q23267 /GB=CAB03277.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=carboxylesterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074107(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074107 NCBI Caenorhabditis elegans ZC376.3 (carboxylesterase) mRNA, complete cds. 11/11 None
ZC376.3 ENSEMBL cdna:known chromosome:CEL140:V:14170950:14174045:-1 gene:ZC376.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015354 2/11 Cross Hyb Matching Probes None
GENEFINDER00000015363 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14171035-14173965(-) 100.0 100.0
Public Domain and Genome References
Gene Title carboxylesterase
Ensembl ZC376.3
Entrez Gene 179916 Entrez gene
SwissProt Q23267 EMBL-EBI
WormBase CE15197 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03277 Hypothetical protein ZC376.3 [Caenorhabditis elegans] emb|CAB00887.1| Hypothetical protein ZC376.3 [Caenorhabditis elegans] ref|NP_506508.1| ZC376.3 [Caenorhabditis elegans] 0.0
blast CAB00884 Hypothetical protein ZC376.2 [Caenorhabditis elegans] ref|NP_506509.3| ZC376.2 [Caenorhabditis elegans] 0.0
blast CAE61007 Hypothetical protein CBG04745 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506508.1 1 634-656
ZC376.3 1 634-656
Sequence
Target Sequence 
>C. ELEGANS:189341_S_AT
aaaactttactatgcctggaacgagagatgggtattattcaagagctttagagttttgga
gcactgcgggtaccaagtcattttctgagcattattccccatcactcgactcatttacca
ctggaattctaattgatcctattgtttcacatatgaaaggagttgcaaccggacctgata
aaacatttgaacagtttgagaaaatgctcctggaaagagaaatgtttctgaaaactttga
aatctgaaagaaaattggaacttttgaaggaaaaatggaggaaaattagaaacggcggag
gaagaattgtagagagagcaggaaatgctccgatggaaatgagagatgggaagaagggca
gtagaggtggagtcagtctcctcttaatcatctttggcggaacgcttctaggtggaatac
tctatgtcactatttcacatttttgcctacatcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACTTTACTATGCCTGGAACGAG 548 103 1547 Antisense
GAGATGGGTATTATTCAAGAGCTTT 535 395 1571 Antisense
GAGTTTTGGAGCACTGCGGGTACCA 496 395 1597 Antisense
GCGGGTACCAAGTCATTTTCTGAGC 63 293 1612 Antisense
ACTCGACTCATTTACCACTGGAATT 546 99 1650 Antisense
AATTGATCCTATTGTTTCACATATG 402 179 1677 Antisense
GAAAGGAGTTGCAACCGGACCTGAT 289 361 1701 Antisense
GTCTCCTCTTAATCATCTTTGGCGG 225 471 1922 Antisense
TTGGCGGAACGCTTCTAGGTGGAAT 349 701 1940 Antisense
GGAATACTCTATGTCACTATTTCAC 446 533 1960 Antisense
ATTTCACATTTTTGCCTACATCACA 56 17 1978 Antisense
Sequence Source Affymetrix Proprietary Database