[Home] | [Total List]

[189339_at] TCTP protein

Description F25H2.11 /REP_DB=WormBase Gene ID /WP=CE09656 /TR=SW:Q93573 /GB=CAB02099.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=TCTP protein
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 61      4grp_highest_8_8 > 14      4grp_high_8_8 > 15      6grp_highest_nonorm > 18      6grp_total > 61      4grp_total > 08      6grp_highest_sub > 03_04      6grp_cgc > 83      6grp_high1_sub > 04      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12838
1 2 3 4 range
A 18357.6
(-3)
P 		19025.1
(-2.6)
P 		21098.8
(-1.5)
P 		29543.1
(3)
P 		11186
B 17046.9
(-3)
P 		19031.2
(-1.5)
P 		21094.7
(0)
P 		25075.9
(3)
P 		8029
C 16883.3
(-3)
P 		17837.4
(-2.6)
P 		18751.1
(-2.1)
P 		29721.2
(3)
P 		12838
avr 17429.3
(-3) 		18631.2
(-2.3) 		20314.9
(-1.4) 		28113.4
(3) 		10684

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7516
1 2 3 4 5 6 range
A 12972.4
(-2.3)
P 		15356.8
(-0.1)
P 		17072.5
(1.5)
P 		18686.3
(3)
P 		12267.5
(-3)
P 		15065.9
(-0.4)
P 		6419
B 13789.6
(2.5)
P 		13985.1
(2.9)
P 		14013.5
(3)
P 		12804.4
(0.4)
P 		13764.9
(2.5)
P 		11170.3
(-3)
P 		2843
C 14347.4
(-1.4)
P 		13913.9
(-2)
P 		17310.9
(3)
P 		16980.6
(2.5)
P 		15152.2
(-0.2)
P 		13230.8
(-3)
P 		4080
avr 13703.1
(-1.9) 		14418.6
(-0.5) 		16132.3
(3) 		16157.1
(3) 		13728.2
(-1.9) 		13155.7
(-3) 		3001
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2554
1 2 3 4 range
A 6684
(3)
P 		4129.8
(-3)
P 		5515.6
(0.3)
P 		4324.5
(-2.5)
P 		2554
B 5436.1
(3)
P 		4700.3
(-3)
P 		4888.1
(-1.5)
P 		5343.7
(2.2)
P 		736
C 5588.8
(-0.7)
P 		5128.4
(-2.5)
P 		6535.3
(3)
P 		5011.5
(-3)
P 		1524
avr 5903
(3) 		4652.8
(-3) 		5646.3
(1.8) 		4893.2
(-1.8) 		1250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3201
1 2 3 4 5 6 range
A 2391.4
(-3)
P 		5461.6
(3)
P 		3718
(-0.4)
P 		4739.3
(1.6)
P 		3701.8
(-0.4)
P 		3668.1
(-0.5)
P 		3070
B 4798.1
(0.8)
P 		4655.1
(0.4)
P 		3402.9
(-3)
P 		3391.4
(-3)
P 		5592.5
(3)
P 		4165.4
(-0.9)
P 		2201
C 5318
(3)
P 		4245.5
(-0.4)
P 		4405.9
(0.1)
P 		3414.8
(-3)
P 		4903
(1.7)
P 		4429.1
(0.2)
P 		1903
avr 4169.2
(-0.9) 		4787.4
(3) 		3842.3
(-3) 		3848.5
(-3) 		4732.4
(2.7) 		4087.5
(-1.4) 		945
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189339_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1138
Sequence Type Exemplar sequence
Representative Public ID F25H2.11 NCBI
Target Description F25H2.11 /REP_DB=WormBase Gene ID /WP=CE09656 /TR=SW:Q93573 /GB=CAB02099.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=TCTP protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060366(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060366 NCBI Caenorhabditis elegans TCTP (translationally-controlled tumor protein) homolog family member (tct-1) (tct-1) mRNA, complete cds. 11/11 None
GENEFINDER00000042633 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10577255:10578055:1 11/11 None
SNAP00000042624 ENSEMBL cdna:SNAP chromosome:CEL140:I:10577567:10578055:1 9/11 None
F25H2.11.2 ENSEMBL cdna:known chromosome:CEL140:I:10577229:10578151:1 gene:F25H2.11 11/11 None
F25H2.11.1 ENSEMBL cdna:known chromosome:CEL140:I:10577233:10578151:1 gene:F25H2.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10577185-10577986(+) 100.0 100.0
Public Domain and Genome References
Gene Title TCTP protein
Gene Symbol tct-1
Ensembl F25H2.11
Entrez Gene 172944 Entrez gene
SwissProt Q93573 EMBL-EBI
WormBase CE09656 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1584505_X_AT similar to Translationally controlled tumor protein (TCTP) (p23) (Histamine-releasing factor) (HRF) cfa
CANINE:1588254_S_AT similar to Translationally controlled tumor protein (TCTP) (p23) (Histamine-releasing factor) (HRF) cfa
CANINE:1585760_X_AT similar to Translationally controlled tumor protein (TCTP) (p23) (Histamine-releasing factor) (HRF) cfa
CANINE:1585479_X_AT similar to Translationally controlled tumor protein (TCTP) (p23) (Histamine-releasing factor) (HRF) cfa
CANINE:1585233_X_AT similar to Translationally controlled tumor protein (TCTP) (p23) (Histamine-releasing factor) (HRF) cfa
CANINE:1583984_S_AT similar to Translationally controlled tumor protein (TCTP) (p23) (Histamine-releasing factor) (HRF) cfa
CANINE_2:CFA.2107.2.A1_S_AT similar to Translationally controlled tumor protein (TCTP) (p23) (Histamine-releasing factor) (HRF) cfa
DROSOPHILA_2:1637164_AT Translationally controlled tumor protein dm
DROSGENOME1:149674_AT Translationally controlled tumor protein dm
CHICKEN:GGA.4312.1.S1_AT tumor protein, translationally-controlled 1 gga
HG-U95AV2:31584_AT tumor protein, translationally-controlled 1 hs
HG-U133_PLUS_2:211943_X_AT tumor protein, translationally-controlled 1 hs
HG-U133A_2:211943_X_AT tumor protein, translationally-controlled 1 hs
HG-U133A:211943_X_AT tumor protein, translationally-controlled 1 hs
HU35KSUBB:RC_AA075144_F_AT tumor protein, translationally-controlled 1 hs
HU35KSUBB:RC_AA075144_I_AT tumor protein, translationally-controlled 1 hs
HUGENEFL:X16064_AT tumor protein, translationally-controlled 1 hs
U133_X3P:G8923031_3P_S_AT tumor protein, translationally-controlled 1 hs
U133_X3P:HS.326456.2.A1_3P_S_AT tumor protein, translationally-controlled 1 hs
U133_X3P:HS.326456.1.S1_3P_S_AT tumor protein, translationally-controlled 1 hs
U133_X3P:HS.279860.5.A1_3P_A_AT tumor protein, translationally-controlled 1 hs
U133_X3P:HS.279860.4.A1_3P_AT tumor protein, translationally-controlled 1 hs
U133_X3P:212869_3P_X_AT tumor protein, translationally-controlled 1 hs
U133_X3P:212284_3P_X_AT tumor protein, translationally-controlled 1 hs
HG-U133A_2:212284_X_AT tumor protein, translationally-controlled 1 hs
HG-U133_PLUS_2:212284_X_AT tumor protein, translationally-controlled 1 hs
HG-U133A:212284_X_AT tumor protein, translationally-controlled 1 hs
HG-U133A_2:212869_X_AT tumor protein, translationally-controlled 1 hs
HG-U133_PLUS_2:212869_X_AT tumor protein, translationally-controlled 1 hs
HG-U133A:212869_X_AT tumor protein, translationally-controlled 1 hs
HG-U133A_2:214327_X_AT tumor protein, translationally-controlled 1 hs
HG-U133_PLUS_2:214327_X_AT tumor protein, translationally-controlled 1 hs
HG-U133A:214327_X_AT tumor protein, translationally-controlled 1 hs
HG-U133A_2:216520_S_AT tumor protein, translationally-controlled 1 hs
HG-FOCUS:216520_S_AT tumor protein, translationally-controlled 1 hs
HG-U133_PLUS_2:216520_S_AT tumor protein, translationally-controlled 1 hs
HG-U133A:216520_S_AT tumor protein, translationally-controlled 1 hs
MU11KSUBB:MSA.34405.0_S_AT similar to tumor protein, translationally-controlled 1 mm
MU11KSUBB:X06407_F_AT similar to tumor protein, translationally-controlled 1 mm
MU11KSUBB:MSA.2412.0_F_AT similar to tumor protein, translationally-controlled 1 mm
MG-U74AV2:102599_AT similar to tumor protein, translationally-controlled 1 mm
RG-U34A:RC_AI230748_AT tumor protein, translationally-controlled 1 rn
RAE230A:1367583_AT tumor protein, translationally-controlled 1 rn
RAT230_2:1367583_AT tumor protein, translationally-controlled 1 rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02099 Hypothetical protein F25H2.11 [Caenorhabditis elegans] ref|NP_492767.1| TCTP (translationally-controlled tumor protein) homolog family member (tct-1) [Caenorhabditis elegans] sp|Q93573|TCTP_CAEEL Translationally-controlled tumor protein homolog (TCTP) 1.0E-90
blast CAE58986 Hypothetical protein CBG02259 [Caenorhabditis briggsae] 1.0E-88
blast CAB02099 Hypothetical protein F25H2.11 [Caenorhabditis elegans] ref|NP_492767.1| TCTP (translationally-controlled tumor protein) homolog family member (tct-1) [Caenorhabditis elegans] sp|Q93573|TCTP_CAEEL Translationally-controlled tumor protein homolog (TCTP) 2.0E-79
blast CAE58986 Hypothetical protein CBG02259 [Caenorhabditis briggsae] 2.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR001983 EMBL-EBI Translationally controlled tumor protein 5.3E-119
Pfam IPR001983 EMBL-EBI Translationally controlled tumor protein 1.5E-99
Sequence
Target Sequence 
>C. ELEGANS:189339_AT
tcaccgatgatgagctctcgtccgactccttcccaatgaagttggttgatgatcttgttt
acgaattcaagggaaagcacgttgtccgcaaggaaggagagatcgttttggctggatcca
acccatctgctgaggaaggagccgaggatgatggatctgacgagcacgtcgagcgtggta
tcgatattgtccttaaccacaagctcgttgagatgaactgctacgaggatgccagtatgt
tcaaggcatacatcaagaaattcatgaagaacgtcatcgaccacatggagaagaacaacc
gtgataaggctgatgtcgatgccttcaagaagaagattcaaggatgggttgtcagccttc
tcgccaaggatcgcttcaagaacctcgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACCGATGATGAGCTCTCGTCCGA 303 625 35 Antisense
TCCGACTCCTTCCCAATGAAGTTGG 632 593 55 Antisense
GGGAAAGCACGTTGTCCGCAAGGAA 458 493 105 Antisense
AGATCGTTTTGGCTGGATCCAACCC 147 67 134 Antisense
GATCCAACCCATCTGCTGAGGAAGG 476 415 149 Antisense
GGATGATGGATCTGACGAGCACGTC 539 513 180 Antisense
GAGCGTGGTATCGATATTGTCCTTA 185 387 205 Antisense
TGTCCTTAACCACAAGCTCGTTGAG 314 255 222 Antisense
GAAGAACGTCATCGACCACATGGAG 247 341 300 Antisense
GGCTGATGTCGATGCCTTCAAGAAG 303 539 342 Antisense
CAAGGATCGCTTCAAGAACCTCGCC 5 185 399 Antisense
Sequence Source Affymetrix Proprietary Database