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[189333_at] protein kinase

Description F33D11.7 /REP_DB=WormBase Gene ID /WP=CE09897 /TR=O44777 /GB=AAB96700.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_total > 99      4grp_total > 42      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 27.8
(-3)
A 		50.6
(3)
A 		35.2
(-1.1)
A 		32.5
(-1.8)
A 		23
B 14.1
(-1.8)
A 		51.7
(3)
A 		5
(-3)
A 		7.1
(-2.7)
A 		47
C 10.8
(-3)
A 		50
(2.9)
A 		50.6
(3)
A 		43.1
(1.9)
A 		40
avr 17.6
(-3) 		50.8
(3) 		30.3
(-0.7) 		27.6
(-1.2) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 37.9
(-2.2)
A 		41
(-2.1)
A 		32.2
(-2.5)
A 		20.5
(-3)
A 		155.7
(3)
M 		95.9
(0.3)
P 		135
B 42.2
(-1.4)
P 		6.7
(-3)
A 		40.9
(-1.4)
A 		52.8
(-0.9)
A 		131.1
(2.7)
P 		138.5
(3)
P 		132
C 33.6
(-3)
A 		56.6
(-1.5)
P 		63.3
(-1.1)
A 		42.8
(-2.4)
A 		84.6
(0.3)
A 		125.7
(3)
P 		92
avr 37.9
(-2.8) 		34.8
(-3) 		45.5
(-2.3) 		38.7
(-2.7) 		123.8
(3) 		120
(2.7) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 10.1
(2.1)
A 		11
(3)
A 		9.2
(1.3)
A 		4.8
(-3)
A 		6
B 4.5
(-1.3)
A 		12.8
(3)
A 		1.2
(-3)
A 		1.5
(-2.8)
A 		12
C 3.6
(-3)
A 		14.4
(1.6)
A 		17.7
(3)
A 		7.3
(-1.4)
A 		14
avr 6.1
(-1.8) 		12.7
(3) 		9.4
(0.6) 		4.5
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 7
(-2.7)
A 		14.6
(-1.7)
A 		7
(-2.7)
A 		5.2
(-3)
A 		47
(3)
M 		23.4
(-0.4)
P 		42
B 14.7
(-1.5)
P 		2.2
(-3)
A 		9.9
(-2.1)
A 		14
(-1.6)
A 		53.2
(3)
P 		51.7
(2.8)
P 		51
C 12.5
(-2.3)
A 		17.3
(-1.4)
P 		16.1
(-1.7)
A 		8.6
(-3)
A 		27.4
(0.4)
A 		42.1
(3)
P 		34
avr 11.4
(-2.6) 		11.4
(-2.6) 		11
(-2.7) 		9.3
(-3) 		42.5
(3) 		39.1
(2.4) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189333_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1157
Sequence Type Exemplar sequence
Representative Public ID F33D11.7 NCBI
Target Description F33D11.7 /REP_DB=WormBase Gene ID /WP=CE09897 /TR=O44777 /GB=AAB96700.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059296(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059296 NCBI Caenorhabditis elegans F33D11.7 (F33D11.7) mRNA, complete cds. 11/11 A 
SNAP00000028955 ENSEMBL cdna:SNAP chromosome:CEL140:I:5858216:5859964:-1 11/11 None
GENEFINDER00000028965 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5858216:5859964:-1 11/11 None
F33D11.7 ENSEMBL cdna:known chromosome:CEL140:I:5858216:5859964:-1 gene:F33D11.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10680864-10682859(+) 93.1 93.1
chrI:5858215-5859964(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein kinase
Ensembl F33D11.7
Entrez Gene 185229 Entrez gene
SwissProt O44777 EMBL-EBI
WormBase CE09897 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB96700 Hypothetical protein F33D11.7 [Caenorhabditis elegans] ref|NP_491697.1| F33D11.7 [Caenorhabditis elegans] 0.0
blast AAB97535 Hypothetical protein C34B2.3 [Caenorhabditis elegans] ref|NP_492794.2| C34B2.3 [Caenorhabditis elegans] 0.0
blast CAE67327 Hypothetical protein CBG12789 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:189333_AT
gttgcttgtggattgagtgttgctcaacaatgcttgaaaggtcttgaagagcttcatcga
atggggttcatccatcgcaacgttgctccgtccgtatttgcaattggaagatacactggt
gacaatcaatctgatatgagaaatatctatattctcgactttggatttgctcatcagtac
atgaataaggatggaacactgaaacctccgtcagctcatccatggaaatacgtgggaagt
cttcgtcatatgccacgtgctgcattttcgaaagtggaattctcaagaatggaagacttg
gaaatgtggttctatatgagtgttgagcttgttaaaggatgccttccgtgggctcatttg
aagaaacctaaagaagttcatgactatcaaaagttgtgccgaaatggtcttcaaatgcgt
gaaatgctcggaggtcttccacctgaatttttcgacattatgcaaatggttgacaaactt
tcatttaccgatactccaaactacaaggaaatctacggacttctcaccaacgctattctc
ttcagtggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCTTGTGGATTGAGTGTTGCTC 564 439 430 Antisense
TCATATGCCACGTGCTGCATTTTCG 445 619 675 Antisense
GCCACGTGCTGCATTTTCGAAAGTG 648 279 681 Antisense
GTTGAGCTTGTTAAAGGATGCCTTC 143 439 751 Antisense
TTAAAGGATGCCTTCCGTGGGCTCA 540 681 761 Antisense
GGAGGTCTTCCACCTGAATTTTTCG 511 515 859 Antisense
CACCTGAATTTTTCGACATTATGCA 123 201 869 Antisense
GACAAACTTTCATTTACCGATACTC 708 363 901 Antisense
CATTTACCGATACTCCAAACTACAA 156 215 911 Antisense
CAAACTACAAGGAAATCTACGGACT 222 189 926 Antisense
CCAACGCTATTCTCTTCAGTGGAAA 172 275 956 Antisense
Sequence Source Affymetrix Proprietary Database