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[189331_s_at] RNA helicase

Description T26G10.1 /REP_DB=WormBase Gene ID /WP=CE00337 /TR=SW:P34580 /GB=CAA82362.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=RNA helicase
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 27      4grp_high_8_8 > 56      6grp_highest_nonorm > 87      6grp_total > 77      4grp_total > 63      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 595
1 2 3 4 range
A 1486.3
(1.7)
P 		1296.2
(-3)
P 		1540.3
(3)
P 		1380
(-0.9)
P 		244
B 1527.8
(0.8)
P 		1451.6
(-0.7)
P 		1631.2
(3)
P 		1342.9
(-3)
P 		288
C 1835.1
(2.6)
P 		1280.8
(-3)
P 		1875.5
(3)
P 		1449.9
(-1.3)
P 		595
avr 1616.4
(1.8) 		1342.9
(-3) 		1682.3
(3) 		1390.9
(-2.2) 		339

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 887
1 2 3 4 5 6 range
A 889
(-3)
P 		1070.7
(-1.7)
P 		931.2
(-2.7)
P 		1073.3
(-1.7)
P 		1116.2
(-1.4)
P 		1724.1
(3)
P 		835
B 903.3
(-3)
P 		1017.2
(-2.2)
P 		1214.8
(-0.7)
P 		1230.2
(-0.6)
P 		1204.2
(-0.8)
P 		1709.6
(3)
P 		806
C 1022.4
(-1.9)
P 		972.8
(-2.3)
P 		863.1
(-3)
P 		1074.9
(-1.6)
P 		1157.7
(-1)
P 		1750.4
(3)
P 		887
avr 938.2
(-3) 		1020.2
(-2.4) 		1003
(-2.5) 		1126.1
(-1.6) 		1159.4
(-1.3) 		1728
(3) 		790
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 452
1 2 3 4 range
A 541.2
(3)
P 		281.4
(-1.6)
P 		402.7
(0.6)
P 		202
(-3)
P 		339
B 487.2
(3)
P 		358.5
(-0.8)
P 		378
(-0.3)
P 		286.2
(-3)
P 		201
C 607.5
(2.3)
P 		368.2
(-1.2)
P 		653.7
(3)
P 		244.5
(-3)
P 		409
avr 545.3
(3) 		336
(-1.2) 		478.1
(1.7) 		244.2
(-3) 		301

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 474
1 2 3 4 5 6 range
A 163.9
(-3)
P 		380.8
(2.1)
P 		202.8
(-2.1)
P 		272.2
(-0.5)
P 		336.8
(1.1)
P 		419.8
(3)
P 		256
B 314.3
(-2.7)
P 		338.6
(-2.2)
P 		295
(-3)
P 		325.8
(-2.5)
P 		489.2
(0.4)
P 		637.5
(3)
P 		343
C 379
(-0.4)
P 		296.8
(-1.7)
P 		219.7
(-2.9)
P 		216.2
(-3)
P 		374.6
(-0.4)
P 		586
(3)
P 		370
avr 285.7
(-2.1) 		338.7
(-1.1) 		239.2
(-3) 		271.4
(-2.4) 		400.2
(0.1) 		547.8
(3) 		309
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189331_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6359
Sequence Type Exemplar sequence
Representative Public ID T26G10.1 NCBI
Target Description T26G10.1 /REP_DB=WormBase Gene ID /WP=CE00337 /TR=SW:P34580 /GB=CAA82362.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=RNA helicase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066668(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066668 NCBI Caenorhabditis elegans T26G10.1 (T26G10.1) mRNA, complete cds. 11/11 None
SNAP00000004812 ENSEMBL cdna:SNAP chromosome:CEL140:III:9404499:9406536:-1 11/11 None
GENEFINDER00000004827 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9404499:9406536:-1 11/11 None
T26G10.1 ENSEMBL cdna:known chromosome:CEL140:III:9404400:9406537:-1 gene:T26G10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9404494-9406532(-) 100.0 100.0
Public Domain and Genome References
Gene Title RNA helicase
Ensembl T26G10.1
Entrez Gene 176321 Entrez gene
SwissProt P34580 EMBL-EBI
WormBase CE00337 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:20600_AT DEAD/DEAH box helicase, putative (RH10) at
ATH1-121501:247608_AT DEAD/DEAH box helicase, putative (RH10) at
CANINE:1604308_AT similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2 cfa
CANINE_2:CFA.18212.1.S1_S_AT similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2 cfa
CANINE_2:CFA.2526.1.A1_AT similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2 cfa
CANINE_2:CFAAFFX.20479.1.S1_S_AT similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2 cfa
DROSOPHILA_2:1640080_AT dm
DROSGENOME1:146573_AT dm
CHICKEN:GGA.16575.1.S1_S_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 gga
CHICKEN:GGAAFFX.11927.1.S1_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 gga
HG-U133_PLUS_2:220890_S_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 hs
HG-U133A:220890_S_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 hs
HG-U133A_2:220890_S_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 hs
HU35KSUBA:C02193_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 hs
U133_X3P:G10047107_3P_A_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 hs
HG-U95B:46316_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 hs
MOUSE430A_2:1438381_X_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 mm
MOE430A:1438381_X_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 mm
MOUSE430_2:1438381_X_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 mm
MU11KSUBA:C77285_RC_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 mm
MU11KSUBA:C77285_RC_G_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 mm
MU11KSUBB:MSA.6129.0_S_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 mm
MU11KSUBB:MSA.19697.0_S_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 mm
MG-U74AV2:96717_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 mm
MG-U74AV2:162489_I_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 mm
MOE430A:1423752_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 mm
MOUSE430A_2:1423752_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 mm
MOUSE430_2:1423752_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 mm
MOUSE430A_2:1438380_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 (Ddx47), mRNA mm
MOE430A:1438380_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 (Ddx47), mRNA mm
MOUSE430_2:1438380_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 (Ddx47), mRNA mm
MU19KSUBA:TC23430_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 (Ddx47), mRNA mm
MU19KSUBC:TC40977_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 (Ddx47), mRNA mm
RAE230A:1375554_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 (predicted) rn
RAT230_2:1375554_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 (predicted) rn
YEAST_2:1770047_AT Protein involved in rRNA processing; required for maturation of the 35S primary transcript of pre-rRNA and for cleavage leading to mature 18S rRNA; homologous to eIF-4a, which is a DEAD box RNA-dependent ATPase with helicase activity Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
4386 helicase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
8026 ATP-dependent helicase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA82362 Hypothetical protein T26G10.1 [Caenorhabditis elegans] ref|NP_499069.1| T26G10.1 [Caenorhabditis elegans] sp|P34580|YN21_CAEEL Putative ATP-dependent RNA helicase T26G10.1 in chromosome III 0.0
blast CAE65221 Hypothetical protein CBG10097 [Caenorhabditis briggsae] 0.0
blast EAL34571 GA21647-PA [Drosophila pseudoobscura] 1.0E-151
Protein Domains
Database ID Description E-Value
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 5.2E-35
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 1.1E-86
Sequence
Target Sequence 
>C. ELEGANS:189331_S_AT
agtgcaattgtcttctgtgccacatgtgctacaaccatgcagattgctgtgatgcttcgt
caacttggaatgcaggctgtccctcttcatggacaaatgagtcaggaaaaacgtctcgga
tcactgaacaaattcaaaagcaaagctcgtgagatccttgtgtgcaccgatgtggcagct
cgtggattggatattccacacgtcgacatggtcatcaattatgatatgccatctcaatcg
aaagattacgttcatcgtgttggaagaactgctcgtgctggaagaagtggtattgcaatt
acagttgttacacaatatgacgtcgaagcctatcagaagattgaagcaaatttaggaaaa
aagctggatgagtacaaatgcgtcgaaaatgaggttatggttttagtagaacgaacacag
gaagcaacagaaaacgcgagaattgaaatgaaagaaatggacgaaaagaagaaatctgga
aagaagcgacgacaaaatgatgatttcggagacactgaggagagtggtggaagatttaag
atgggaatcaaaagtatgggaggtcgaggtggcagtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGCAATTGTCTTCTGTGCCACAT 682 59 865 Antisense
GTGCCACATGTGCTACAACCATGCA 137 479 881 Antisense
GATTGCTGTGATGCTTCGTCAACTT 153 435 906 Antisense
AACTTGGAATGCAGGCTGTCCCTCT 288 139 926 Antisense
AGGCTGTCCCTCTTCATGGACAAAT 150 55 938 Antisense
AAAACGTCTCGGATCACTGAACAAA 310 131 972 Antisense
AGCTCGTGAGATCCTTGTGTGCACC 623 79 1008 Antisense
TGCACCGATGTGGCAGCTCGTGGAT 26 579 1027 Antisense
GGATATTCCACACGTCGACATGGTC 113 511 1053 Antisense
GACGTCGAAGCCTATCAGAAGATTG 582 377 1183 Antisense
GTATGGGAGGTCGAGGTGGCAGTGG 130 455 1418 Antisense
Sequence Source Affymetrix Proprietary Database