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[189327_s_at]

Description Y47H9C.4 /REP_DB=WormBase Gene ID /WP=CE20264 /TR=Q9XWD6 /GB=CAA21739.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=EGF-like domain
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 82      6grp_total > 39      4grp_total > 13      6grp_highest_sub > Cu      6grp_cgc > 08      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 275
1 2 3 4 range
A 364.3
(0.6)
P 		268.1
(-2.4)
P 		247.4
(-3)
P 		440.9
(3)
P 		194
B 464.9
(1.7)
P 		314.4
(-1.7)
P 		257.7
(-3)
P 		520.5
(3)
P 		263
C 305.9
(-1.5)
P 		323.5
(-1)
P 		245.5
(-3)
P 		481.7
(3)
P 		236
avr 378.4
(0.3) 		302
(-1.7) 		250.2
(-3) 		481
(3) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 379
1 2 3 4 5 6 range
A 473.7
(2.3)
P 		365
(-0.2)
P 		245.9
(-3)
P 		338
(-0.8)
P 		482.4
(2.5)
P 		502.5
(3)
P 		257
B 555.6
(3)
P 		349.6
(-1.4)
P 		271.9
(-3)
P 		363.6
(-1.1)
P 		397.2
(-0.4)
P 		452.6
(0.8)
P 		284
C 595.7
(3)
P 		289.8
(-1.8)
P 		381.6
(-0.4)
P 		217.1
(-3)
P 		474.4
(1.1)
P 		334.9
(-1.1)
P 		379
avr 541.7
(3) 		334.8
(-2.1) 		299.8
(-3) 		306.2
(-2.8) 		451.3
(0.8) 		430
(0.2) 		242
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 132.6
(3)
P 		58.2
(-3)
P 		64.7
(-2.5)
P 		64.5
(-2.5)
P 		74
B 148.2
(3)
P 		77.7
(-1.8)
P 		59.7
(-3)
P 		110.9
(0.5)
P 		89
C 101.2
(3)
P 		93
(0.5)
P 		85.6
(-1.7)
P 		81.2
(-3)
P 		20
avr 127.3
(3) 		76.3
(-2.3) 		70
(-3) 		85.5
(-1.4) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 87.3
(-0.8)
P 		129.8
(2)
P 		53.5
(-3)
P 		85.7
(-0.9)
P 		145.6
(3)
P 		122.4
(1.5)
P 		92
B 193.3
(3)
P 		116.4
(-0.6)
P 		66
(-3)
P 		96.3
(-1.6)
P 		161.4
(1.5)
P 		168.8
(1.8)
P 		127
C 220.8
(3)
P 		88.4
(-1.5)
P 		97.1
(-1.2)
P 		43.7
(-3)
P 		153.5
(0.7)
P 		112.1
(-0.7)
P 		177
avr 167.1
(3) 		111.5
(-0.5) 		72.2
(-3) 		75.2
(-2.8) 		153.5
(2.1) 		134.4
(0.9) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189327_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.769
Sequence Type Exemplar sequence
Representative Public ID Y47H9C.4 NCBI
Target Description Y47H9C.4 /REP_DB=WormBase Gene ID /WP=CE20264 /TR=Q9XWD6 /GB=CAA21739.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=EGF-like domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170927(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170927 NCBI Caenorhabditis elegans CEll Death abnormality family member (ced-1) (ced-1) mRNA, complete cds. 11/11 A 
SNAP00000036881 ENSEMBL cdna:SNAP chromosome:CEL140:I:11860075:11877262:-1 11/11 None
GENEFINDER00000036907 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11860075:11866881:-1 11/11 None
Y47H9C.4a ENSEMBL cdna:known chromosome:CEL140:I:11859688:11876221:-1 gene:Y47H9C.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026601 7/11 Cross Hyb Matching Probes None
NM_001026602 8/11 Cross Hyb Matching Probes None
Y47H9C.4b 7/11 Cross Hyb Matching Probes A 
Y47H9C.4c 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173064 3 1 NM_001026601 173720_at (11)
NM_170927 173720_at (11), 189327_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11860005-11876152(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y47H9C.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21739 Hypothetical protein Y47H9C.4a [Caenorhabditis elegans] ref|NP_740922.1| CEll Death abnormality family member (ced-1) [Caenorhabditis elegans] gb|AAG60061.1| CED-1 [Caenorhabditis elegans] 0.0
blast CAD27614 Hypothetical protein Y47H9C.4b [Caenorhabditis elegans] ref|NP_001021772.1| CEll Death abnormality family member (ced-1) [Caenorhabditis elegans] 0.0
blast CAD27615 Hypothetical protein Y47H9C.4c [Caenorhabditis elegans] ref|NP_001021773.1| CEll Death abnormality family member (ced-1) [Caenorhabditis elegans] 0.0
blast CAA21739 Hypothetical protein Y47H9C.4a [Caenorhabditis elegans] ref|NP_740922.1| CEll Death abnormality family member (ced-1) [Caenorhabditis elegans] gb|AAG60061.1| CED-1 [Caenorhabditis elegans] 2.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 3.7E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.1E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.2E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 3.7E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.1E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.2E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_740922.1 1 909-931
Y47H9C.4a 1 909-931
SNAP00000036881 1 880-902
GENEFINDER00000036907 1 156-178
Sequence
Target Sequence 
>C. ELEGANS:189327_S_AT
ttctttgtgctcctgattgttgctttatgtggtggattaggattaattgcattattctat
aggaataaatatcaaaaggaaaaagatccggatatgcctactgtttcattccacaaagcg
ccgaacaacgatgaaggccgagaattccagaatcccctatactctcgtcaatcagttttt
ccagattctgacgctttttcatcagaaaataatggaaatcatcaaggaggaccacccaat
ggtcttttaactcttgaagaagaagaattggagaataaaaagattcatggaagaagtgct
gctggacggggaaataacgactacgcctccctggacgaagtagctggagaaggatcatca
tcatcagcttcagcttcagcttctcgtagaggtttaaattcatctgaacaatcacgtcga
cctctattagaagagcatgacgaagaagaattcgatgaaccacacgagaactcgatatct
ccagcacatgcagtaacgacatcgaatcacaatgaaaacccatacgccgacatctcatca
ccggaccccgtcacccagaactctgcgaacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTTGTGCTCCTGATTGTTGCTT 390 691 2746 Antisense
AAAGATCCGGATATGCCTACTGTTT 35 119 2827 Antisense
AGAATTCCAGAATCCCCTATACTCT 536 75 2886 Antisense
TACTCTCGTCAATCAGTTTTTCCAG 474 643 2905 Antisense
TTCCAGATTCTGACGCTTTTTCATC 282 701 2924 Antisense
CCACCCAATGGTCTTTTAACTCTTG 203 265 2977 Antisense
CAGCTTCAGCTTCTCGTAGAGGTTT 146 203 3116 Antisense
TCTGAACAATCACGTCGACCTCTAT 694 607 3148 Antisense
ACTCGATATCTCCAGCACATGCAGT 557 97 3215 Antisense
CAATGAAAACCCATACGCCGACATC 10 183 3255 Antisense
CGTCACCCAGAACTCTGCGAACAAA 262 247 3294 Antisense
Sequence Source Affymetrix Proprietary Database