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[189325_at] carboxypeptidase

Description F02D8.4 /REP_DB=WormBase Gene ID /WP=CE09182 /TR=Q19121 /GB=CAB01666.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=carboxypeptidase
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 03      4grp_high_8_8 > 38      6grp_highest_nonorm > 85      6grp_total > 99      4grp_total > 41      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 879
1 2 3 4 range
A 892.4
(-3)
P 		1705
(3)
P 		1454.9
(1.2)
P 		1258.7
(-0.3)
P 		813
B 826.3
(-3)
P 		1644.4
(3)
P 		1414.3
(1.3)
P 		1342.5
(0.8)
P 		818
C 863.5
(-3)
P 		1474.8
(3)
P 		1417.7
(2.4)
P 		1226.4
(0.6)
P 		611
avr 860.7
(-3) 		1608.1
(3) 		1429
(1.6) 		1275.9
(0.3) 		747

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 338
1 2 3 4 5 6 range
A 867.9
(1.2)
P 		860.3
(1)
P 		689.7
(-3)
P 		804.1
(-0.3)
P 		905.6
(2.1)
P 		943.5
(3)
P 		254
B 791.6
(-0.9)
P 		768.8
(-1.3)
P 		673.4
(-3)
P 		717
(-2.2)
P 		1011.5
(3)
P 		960.8
(2.1)
P 		338
C 690.1
(-3)
P 		737.7
(-2)
P 		813.6
(-0.3)
P 		734.8
(-2)
P 		871.7
(1)
P 		964.9
(3)
P 		275
avr 783.2
(-1.5) 		788.9
(-1.4) 		725.6
(-3) 		752
(-2.3) 		929.6
(2.3) 		956.4
(3) 		231
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 310
1 2 3 4 range
A 324.9
(1.3)
P 		370.1
(2.7)
P 		380.3
(3)
P 		184.3
(-3)
P 		196
B 263.5
(-3)
P 		406.1
(3)
P 		327.7
(-0.3)
P 		286.1
(-2)
P 		143
C 285.9
(-1.3)
P 		424
(1.5)
P 		494.1
(3)
P 		206.8
(-3)
P 		287
avr 291.4
(-0.7) 		400.1
(3) 		400.7
(3) 		225.7
(-3) 		175

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 263
1 2 3 4 5 6 range
A 160
(-2.6)
P 		306
(3)
P 		150.2
(-3)
P 		204
(-0.9)
P 		273.3
(1.7)
P 		229.7
(0.1)
P 		156
B 275.4
(-0.3)
P 		255.9
(-0.8)
P 		163.5
(-3)
P 		189.9
(-2.4)
P 		411
(3)
P 		358.3
(1.7)
P 		248
C 255.8
(0.7)
P 		225.1
(-0.4)
P 		207.1
(-1)
P 		147.8
(-3)
P 		282.1
(1.6)
P 		323
(3)
P 		175
avr 230.4
(-0.7) 		262.3
(0.6) 		173.6
(-3) 		180.6
(-2.7) 		322.1
(3) 		303.7
(2.3) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189325_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13500
Sequence Type Exemplar sequence
Representative Public ID F02D8.4 NCBI
Target Description F02D8.4 /REP_DB=WormBase Gene ID /WP=CE09182 /TR=Q19121 /GB=CAB01666.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=carboxypeptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074283(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074283 NCBI Caenorhabditis elegans F02D8.4 (carboxypeptidase) mRNA, complete cds. 11/11 None
F02D8.4 ENSEMBL cdna:known chromosome:CEL140:V:14988335:14990093:1 gene:F02D8.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004125 4/11 Cross Hyb Matching Probes None
GENEFINDER00000004126 4/11 Cross Hyb Matching Probes None
SNAP00000022408 7/11 Cross Hyb Matching Probes None
GENEFINDER00000022432 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14988334-14990042(+) 100.0 100.0
Public Domain and Genome References
Gene Title carboxypeptidase
Ensembl F02D8.4
Entrez Gene 179994 Entrez gene
SwissProt Q19121 EMBL-EBI
WormBase CE09182 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1639641_AT dm
DROSGENOME1:152794_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4182 carboxypeptidase A activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_506684 F02D8.4 [Caenorhabditis elegans] 1.0E-180
blast CAB01666 Hypothetical protein F02D8.4 [Caenorhabditis elegans] emb|CAB01647.2| Hypothetical protein F02D8.4 [Caenorhabditis elegans] 1.0E-180
blast CAE66344 Hypothetical protein CBG11596 [Caenorhabditis briggsae] 1.0E-158
Protein Domains
Database ID Description E-Value
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 1.1E-64
Sequence
Target Sequence 
>C. ELEGANS:189325_AT
ggagtcagtcattcacagtgttcggaaatcttctgcggttctcgtccacaatccgagcca
gaagtgttggcactgacgaatgcgattataagagatgaggagaggattaagggatacatt
gcgttgcattcgtacggacaagagatattgtatccatggggacacacacaacgaacctat
ccaactgatgtgcaggatttgattcaggttggtcgagcaatggcatctgctatccgtgca
gtcaacaatacggattatacagttgtaaactctggagatggcctttatcctgccgctgga
gcatcagatgattgggcaaagtctcgtggaatcaagtactcctacaccatcgagctctct
ccaattgatgatttcactggattctccctcccagaagatcggatcaatcaagtgtgccga
gaagcattccaggctattcaagttctcatgatcgaggtcaagtccaagttcggattcaaa
caaatgacgtcatcaactgcatcatctgctcaatcgacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTCAGTCATTCACAGTGTTCGG 486 517 409 Antisense
AGTGTTCGGAAATCTTCTGCGGTTC 5 57 425 Antisense
TTCTCGTCCACAATCCGAGCCAGAA 84 693 447 Antisense
CACACAACGAACCTATCCAACTGAT 316 195 573 Antisense
GGCATCTGCTATCCGTGCAGTCAAC 528 535 630 Antisense
TCTGGAGATGGCCTTTATCCTGCCG 407 607 679 Antisense
AATCAAGTACTCCTACACCATCGAG 511 171 738 Antisense
TCGAGCTCTCTCCAATTGATGATTT 343 603 758 Antisense
TCTCCCTCCCAGAAGATCGGATCAA 273 611 791 Antisense
GCATTCCAGGCTATTCAAGTTCTCA 325 307 832 Antisense
ACTGCATCATCTGCTCAATCGACAC 562 97 904 Antisense
Sequence Source Affymetrix Proprietary Database