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[189324_s_at] P58 protein like

Description K07A1.8 /REP_DB=WormBase Gene ID /WP=CE11854 /TR=P90913 /GB=CAB03169.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=P58 protein like
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 49      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 77      6grp_total > 49      4grp_total > 48      6grp_highest_sub > Cu      6grp_cgc > 09      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1399
1 2 3 4 range
A 1252.9
(-3)
P 		2145.1
(1.7)
P 		2388.9
(3)
P 		1784.3
(-0.2)
P 		1136
B 1190.7
(-3)
P 		2190.7
(2.2)
P 		2338.1
(3)
P 		1617.6
(-0.8)
P 		1147
C 1079.2
(-3)
P 		1893.6
(0.5)
P 		2477.8
(3)
P 		1422.4
(-1.5)
P 		1399
avr 1174.3
(-3) 		2076.5
(1.4) 		2401.6
(3) 		1608.1
(-0.9) 		1227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 887
1 2 3 4 5 6 range
A 1130.7
(-3)
P 		1534.8
(0.8)
P 		1179.3
(-2.5)
P 		1447.4
(-0)
P 		1512.4
(0.6)
P 		1770.8
(3)
P 		640
B 1889.2
(3)
P 		1362.8
(-0.6)
P 		1002.1
(-3)
P 		1458.6
(0.1)
P 		1352.9
(-0.6)
P 		1524.3
(0.5)
P 		887
C 1655.4
(3)
P 		1373.8
(-3)
P 		1532.5
(0.4)
P 		1519.9
(0.1)
P 		1648.1
(2.8)
P 		1535
(0.4)
P 		282
avr 1558.4
(2.2) 		1423.8
(-0) 		1238
(-3) 		1475.3
(0.8) 		1504.5
(1.3) 		1610
(3) 		372
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 624
1 2 3 4 range
A 456.2
(0.2)
P 		465.6
(0.4)
P 		624.5
(3)
P 		261.2
(-3)
P 		363
B 379.7
(-1.9)
P 		541
(3)
P 		541.8
(3)
P 		344.7
(-3)
P 		197
C 357.2
(-1.9)
P 		544.4
(-0.1)
P 		863.6
(3)
P 		239.8
(-3)
P 		624
avr 397.7
(-1.2) 		517
(0.6) 		676.6
(3) 		281.9
(-3) 		395

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 449
1 2 3 4 5 6 range
A 208.4
(-3)
P 		545.9
(3)
P 		256.8
(-2.1)
P 		367.1
(-0.2)
P 		456.4
(1.4)
P 		431.1
(1)
P 		338
B 657.3
(3)
P 		453.6
(0)
P 		243.3
(-3)
P 		386.3
(-0.9)
P 		549.6
(1.4)
P 		568.4
(1.7)
P 		414
C 613.6
(3)
P 		419.2
(-0.8)
P 		390.1
(-1.4)
P 		305.7
(-3)
P 		533.3
(1.4)
P 		513.9
(1.1)
P 		308
avr 493.1
(2.4) 		472.9
(1.9) 		296.7
(-3) 		353
(-1.4) 		513.1
(3) 		504.5
(2.8) 		216
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189324_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.615
Sequence Type Exemplar sequence
Representative Public ID K07A1.8 NCBI
Target Description K07A1.8 /REP_DB=WormBase Gene ID /WP=CE11854 /TR=P90913 /GB=CAB03169.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=P58 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060147(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060147 NCBI Caenorhabditis elegans Intracellular LEctin family member (ile-1) (ile-1) mRNA, complete cds. 11/11 None
SNAP00000041854 ENSEMBL cdna:SNAP chromosome:CEL140:I:9617939:9619654:-1 11/11 None
GENEFINDER00000041867 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9617939:9619654:-1 11/11 None
K07A1.8.3 ENSEMBL cdna:known chromosome:CEL140:I:9617636:9619658:-1 gene:K07A1.8 11/11 None
K07A1.8.1 ENSEMBL cdna:known chromosome:CEL140:I:9617636:9619707:-1 gene:K07A1.8 11/11 A 
K07A1.8.2 ENSEMBL cdna:known chromosome:CEL140:I:9617636:9619656:-1 gene:K07A1.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9617869-9619585(-) 100.0 100.0
Public Domain and Genome References
Gene Title P58 protein like
Gene Symbol ile-1
Ensembl K07A1.8
Entrez Gene 172799 Entrez gene
SwissProt P90913 EMBL-EBI
WormBase CE11854 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1587465_AT similar to ERGIC-53 protein precursor (ER-Golgi intermediate compartment 53 kDa protein) (Lectin, mannose-binding 1) (Gp58) (Intracellular mannose specific lectin MR60) cfa
CANINE_2:CFAAFFX.1112.1.S1_S_AT similar to ERGIC-53 protein precursor (ER-Golgi intermediate compartment 53 kDa protein) (Lectin, mannose-binding 1) (Gp58) (Intracellular mannose specific lectin MR60) cfa
DROSOPHILA_2:1640635_A_AT dm
DROSOPHILA_2:1624560_AT dm
DROSGENOME1:155025_AT dm
CHICKEN:GGA.1035.2.S1_A_AT lectin, mannose-binding, 1 gga
CHICKEN:GGA.2274.1.S1_A_AT Similar to ERGIC-53 protein precursor (ER-Golgi intermediate compartment 53 kDa protein) (Lectin, mannose-binding 1) (Gp58) (Intracellular mannose specific lectin MR60) gga
HG-U133A:203293_S_AT lectin, mannose-binding, 1 hs
HG-U133_PLUS_2:203293_S_AT lectin, mannose-binding, 1 hs
HG-FOCUS:203293_S_AT lectin, mannose-binding, 1 hs
HG-U133A_2:203293_S_AT lectin, mannose-binding, 1 hs
HG-U133A:203294_S_AT lectin, mannose-binding, 1 hs
HG-U133A_2:203294_S_AT lectin, mannose-binding, 1 hs
HG-U133_PLUS_2:203294_S_AT lectin, mannose-binding, 1 hs
HU35KSUBD:RC_AA600257_S_AT lectin, mannose-binding, 1 hs
HUGENEFL:X71661_AT lectin, mannose-binding, 1 hs
HUGENEFL:U09716_S_AT lectin, mannose-binding, 1 hs
U133_X3P:G606827_3P_A_AT lectin, mannose-binding, 1 hs
U133_X3P:G10862689_3P_S_AT lectin, mannose-binding, 1 hs
HU35KSUBA:RC_AA452855_AT Lectin, mannose-binding, 1 hs
HU35KSUBA:AA404252_AT Lectin, mannose-binding, 1 hs
HU35KSUBC:RC_AA243495_AT Lectin, mannose-binding, 1 hs
HU35KSUBD:RC_AA459256_AT Lectin, mannose-binding, 1 hs
U133_X3P:HS.5822.0.S1_3P_AT Lectin, mannose-binding, 1 hs
HG-U133_PLUS_2:224629_AT Lectin, mannose-binding, 1 hs
HG-U133B:224629_AT Lectin, mannose-binding, 1 hs
HG-U95AV2:34734_AT Lectin, mannose-binding, 1 hs
HG-U95C:64263_S_AT Lectin, mannose-binding, 1 hs
HG-U95C:65907_R_AT Lectin, mannose-binding, 1 hs
MU11KSUBB:W40847_AT lectin, mannose-binding, 1 mm
MU11KSUBB:W40847_G_AT lectin, mannose-binding, 1 mm
MG-U74BV2:112766_AT lectin, mannose-binding, 1 mm
MG-U74AV2:161288_R_AT lectin, mannose-binding, 1 mm
MG-U74AV2:160270_AT lectin, mannose-binding, 1 mm
MOE430A:1428129_AT lectin, mannose-binding, 1 mm
MOUSE430A_2:1428129_AT lectin, mannose-binding, 1 mm
MOUSE430_2:1428129_AT lectin, mannose-binding, 1 mm
MOE430A:1428130_AT lectin, mannose-binding, 1 mm
MOUSE430A_2:1428130_AT lectin, mannose-binding, 1 mm
MOUSE430_2:1428130_AT lectin, mannose-binding, 1 mm
MOE430A:1452671_S_AT lectin, mannose-binding, 1 mm
MOUSE430A_2:1452671_S_AT lectin, mannose-binding, 1 mm
MOUSE430_2:1452671_S_AT lectin, mannose-binding, 1 mm
MOE430A:1419951_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
MOUSE430A_2:1419951_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
MOUSE430_2:1419951_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
MOE430B:1444037_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
MOUSE430_2:1444037_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
MG-U74CV2:168563_R_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
MU19KSUBA:TC19935_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
MU19KSUBA:TC19935_G_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
MU19KSUBA:TC23910_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
MU19KSUBA:TC23910_G_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
MU19KSUBC:TC38028_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
MU11KSUBA:D18928_RC_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
RG-U34A:U44129_AT lectin, mannose-binding, 1 rn
RAE230A:1368848_AT lectin, mannose-binding, 1 rn
RAT230_2:1368848_AT lectin, mannose-binding, 1 rn
RAE230B:1385238_AT Lectin, mannose-binding, 1 rn
RAT230_2:1385238_AT Lectin, mannose-binding, 1 rn
RG-U34A:RC_AA997526_AT Lectin, mannose-binding, 1 rn
RG-U34A:RC_AI137470_AT Lectin, mannose-binding, 1 rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03169 Hypothetical protein K07A1.8 [Caenorhabditis elegans] ref|NP_492548.1| Intracellular LEctin family member (ile-1) [Caenorhabditis elegans] 0.0
blast CAE60162 Hypothetical protein CBG03714 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005052 EMBL-EBI Legume-like lectin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492548.1 1 460-482
K07A1.8.3 1 460-482
K07A1.8.1 1 460-482
K07A1.8.2 1 460-482
SNAP00000041854 1 460-482
GENEFINDER00000041867 1 460-482
Sequence
Target Sequence 
>C. ELEGANS:189324_S_AT
tatgaggatgctactgctcgcgaacttcgtttaatttatgagtctcaaaacgctattcat
caggttatgcagaacatggatcagaggctagcacaaatccagcaggctcaaacgtctggt
gtcgctgctgcagtacctcactccggtggagcagcaccagctccagtcgccgctggcgga
agcttccaacaacacgagaaaaatgaagttataacgtcattgcgagatttaactcaaacg
attcgtgacatgaaacagtatgtcaatgaaatcttcaccaaaacgtataacattgatcaa
aaaattgctcaaggtggtgctggtgcaggtggagtagacagcagcatgcatcaaaaagtt
gattcattgcttaatgagctacgaacagtcagagcaactcaaattcaaacaagtggacct
ggagccgctgcgaactgcccgaacatttcatgcgtctcgtcaaccatcttcatgttaatc
atattcattcaatcagccatcatagttgcagtcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGAGGATGCTACTGCTCGCGAAC 341 657 937 Antisense
GAGTCTCAAAACGCTATTCATCAGG 704 399 976 Antisense
AGGCTAGCACAAATCCAGCAGGCTC 389 47 1021 Antisense
CAGCAGGCTCAAACGTCTGGTGTCG 9 205 1036 Antisense
GCTGGCGGAAGCTTCCAACAACACG 95 293 1108 Antisense
GGTGGAGTAGACAGCAGCATGCATC 5 499 1264 Antisense
CAAACAAGTGGACCTGGAGCCGCTG 495 191 1342 Antisense
CGAACATTTCATGCGTCTCGTCAAC 135 251 1376 Antisense
TCTCGTCAACCATCTTCATGTTAAT 206 611 1391 Antisense
AATCATATTCATTCAATCAGCCATC 321 169 1413 Antisense
AATCAGCCATCATAGTTGCAGTCGT 102 171 1427 Antisense
Sequence Source Affymetrix Proprietary Database