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[189323_at] acid phosphatase

Description F02E9.7 /REP_DB=WormBase Gene ID /WP=CE09190 /TR=O01320 /GB=CAB04053.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=acid phosphatase
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 87      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 95      6grp_total > 76      4grp_total > 12      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 707
1 2 3 4 range
A 619.9
(-0.7)
P 		552
(-1.3)
P 		359.6
(-3)
P 		1044
(3)
P 		684
B 534.8
(-1.1)
P 		541.6
(-1)
P 		382.2
(-3)
P 		868.3
(3)
P 		486
C 658.6
(0.7)
P 		461.1
(-1.6)
P 		337.2
(-3)
P 		864.4
(3)
P 		527
avr 604.4
(-0.4) 		518.2
(-1.3) 		359.7
(-3) 		925.6
(3) 		566

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 552
1 2 3 4 5 6 range
A 691.6
(-0)
P 		474.6
(-3)
P 		606.4
(-1.2)
P 		721.5
(0.4)
P 		683.9
(-0.1)
P 		913.8
(3)
P 		439
B 611.1
(-1.1)
P 		439.4
(-3)
P 		609.4
(-1.2)
P 		680.4
(-0.4)
P 		708.9
(-0.1)
P 		991
(3)
P 		552
C 545.1
(-1.9)
P 		461.7
(-3)
P 		567.6
(-1.5)
P 		755.4
(1)
P 		563.3
(-1.6)
P 		896.9
(3)
P 		435
avr 615.9
(-1) 		458.6
(-3) 		594.5
(-1.3) 		719.1
(0.3) 		652
(-0.6) 		933.9
(3) 		475
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 225.7
(3)
P 		119.8
(-1.8)
P 		94
(-3)
P 		152.8
(-0.3)
P 		132
B 170.5
(2.1)
P 		133.8
(-0.2)
P 		88.6
(-3)
P 		185
(3)
P 		96
C 218
(3)
P 		132.6
(-2.1)
P 		117.5
(-3)
P 		145.7
(-1.3)
P 		101
avr 204.7
(3) 		128.7
(-1.4) 		100
(-3) 		161.2
(0.5) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 127.5
(-3)
P 		168.8
(-0.4)
P 		132.1
(-2.7)
P 		183
(0.5)
P 		206.4
(2)
P 		222.5
(3)
P 		95
B 212.6
(-1.2)
P 		146.3
(-3)
P 		148
(-3)
P 		180.2
(-2.1)
P 		288
(0.8)
P 		369.5
(3)
P 		223
C 202.1
(-0.7)
P 		140.9
(-3)
P 		144.5
(-2.9)
P 		151.9
(-2.6)
P 		182.3
(-1.4)
P 		300.3
(3)
P 		159
avr 180.7
(-1.5) 		152
(-2.6) 		141.5
(-3) 		171.7
(-1.8) 		225.6
(0.2) 		297.4
(3) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189323_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2456
Sequence Type Exemplar sequence
Representative Public ID F02E9.7 NCBI
Target Description F02E9.7 /REP_DB=WormBase Gene ID /WP=CE09190 /TR=O01320 /GB=CAB04053.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=acid phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059882(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059882 NCBI Caenorhabditis elegans F02E9.7 (F02E9.7) mRNA, complete cds. 11/11 None
GENEFINDER00000012714 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8422120:8424211:1 11/11 None
SNAP00000012707 ENSEMBL cdna:SNAP chromosome:CEL140:I:8422844:8424211:1 11/11 None
F02E9.7 ENSEMBL cdna:known chromosome:CEL140:I:8421385:8424254:1 gene:F02E9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8421347-8424142(+) 100.0 100.0
Public Domain and Genome References
Gene Title acid phosphatase
Ensembl F02E9.7
Entrez Gene 172627 Entrez gene
SwissProt O01320 EMBL-EBI
WormBase CE09190 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262830_AT purple acid phosphatase, putative at
CANINE_2:CFA.18293.1.S1_AT similar to tartrate resistant acid phosphatase 5 precursor cfa
CANINE_2:CFAAFFX.26498.1.S1_S_AT similar to tartrate resistant acid phosphatase 5 precursor cfa
HG-U95AV2:677_S_AT acid phosphatase 5, tartrate resistant hs
HC-G110:677_S_AT acid phosphatase 5, tartrate resistant hs
HG-U133A_2:204638_AT acid phosphatase 5, tartrate resistant hs
HG-U133A:204638_AT acid phosphatase 5, tartrate resistant hs
HG-U133_PLUS_2:204638_AT acid phosphatase 5, tartrate resistant hs
HG-FOCUS:204638_AT acid phosphatase 5, tartrate resistant hs
HUGENEFL:J04430_S_AT acid phosphatase 5, tartrate resistant hs
U133_X3P:G6138970_3P_AT acid phosphatase 5, tartrate resistant hs
U133_X3P:HS2.407572.1.S1_3P_AT Acid phosphatase 5, tartrate resistant hs
HG-U133_PLUS_2:1563204_AT Acid phosphatase 5, tartrate resistant hs
MG-U74AV2:98859_AT acid phosphatase 5, tartrate resistant mm
MOUSE430A_2:1431609_A_AT acid phosphatase 5, tartrate resistant mm
MOUSE430_2:1431609_A_AT acid phosphatase 5, tartrate resistant mm
MOE430A:1431609_A_AT acid phosphatase 5, tartrate resistant mm
MU11KSUBA:M99054_S_AT acid phosphatase 5, tartrate resistant mm
MG-U74BV2:162543_R_AT acid phosphatase 5, tartrate resistant mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04053 Hypothetical protein F02E9.7 [Caenorhabditis elegans] ref|NP_492283.1| F02E9.7 [Caenorhabditis elegans] 0.0
blast CAE67273 Hypothetical protein CBG12721 [Caenorhabditis briggsae] 0.0
blast CAE67273 Hypothetical protein CBG12721 [Caenorhabditis briggsae] 1.0E-154
blast XP_796862 PREDICTED: similar to tartrate resistant acid phosphatase 5 precursor [Strongylocentrotus purpuratus] 4.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 6.3E-19
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 6.3E-19
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.9E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492283.1 1 37-59
F02E9.7 1 37-59
GENEFINDER00000012714 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:189323_AT
acatgatccacgtggtcctgttaatataactgccgctgaagaacaatgggcatggttgga
gaataacttagaagcaagcagtgcccaatacctaataatttctggtcattatcctgttca
ttctatgtcatcacatggtccaactgactgtttacgtcaacgtttggatccacttttaaa
acgatttaatgtgaatgcttacttctcaggacacgaccattcgttgcagcatttcacttt
tcccgggtatggagagcatataattaactatgttgtgtctggagcagcttctcgagcaga
tgcatcaacgaagcatattaaagaattcagtagggatacgttgaagttcaattatccgga
aaaatcatggttctcgtggtcaccagtttcgcagctcggattccgtaaaggcggcttaat
atatgcagaatttggacattacaatgctcgactcgatttctttgacaaaagaggaaaaca
gctttattcgacgatcatccccacacgtgtgatcccgacggatacatcgacacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATGATCCACGTGGTCCTGTTAAT 188 105 702 Antisense
GCAAGCAGTGCCCAATACCTAATAA 416 321 775 Antisense
TTCTGGTCATTATCCTGTTCATTCT 385 693 801 Antisense
TTACGTCAACGTTTGGATCCACTTT 374 679 853 Antisense
TGCTTACTTCTCAGGACACGACCAT 199 561 897 Antisense
GCATTTCACTTTTCCCGGGTATGGA 481 305 930 Antisense
TTGTGTCTGGAGCAGCTTCTCGAGC 370 709 974 Antisense
AGTTTCGCAGCTCGGATTCCGTAAA 622 61 1086 Antisense
TGCTCGACTCGATTTCTTTGACAAA 228 581 1146 Antisense
ACAGCTTTATTCGACGATCATCCCC 193 109 1179 Antisense
GATCCCGACGGATACATCGACACGA 274 415 1212 Antisense
Sequence Source Affymetrix Proprietary Database