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[189320_at] protein kinase

Description Y41G9A.3 /REP_DB=WormBase Gene ID /WP=CE24271 /TR=Q9N501 /GB=AAF60550.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_total > 13      4grp_total > 31      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 346
1 2 3 4 range
A 431.7
(3)
P 		106.2
(-2.8)
A 		94.8
(-3)
A 		277.9
(0.3)
P 		337
B 418.8
(3)
P 		194.4
(-1.3)
A 		102.9
(-3)
A 		311.5
(1)
P 		316
C 440.6
(3)
P 		151.1
(-2.5)
A 		126
(-3)
A 		208.7
(-1.4)
P 		315
avr 430.4
(3) 		150.6
(-2.2) 		107.9
(-3) 		266
(-0.1) 		323

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 397
1 2 3 4 5 6 range
A 278.2
(0.4)
P 		451.9
(3)
P 		181.2
(-1.1)
P 		333.2
(1.2)
P 		86
(-2.5)
A 		55.2
(-3)
A 		397
B 320.8
(3)
P 		304.7
(2.6)
P 		186.3
(-0.2)
P 		172.3
(-0.5)
P 		121.4
(-1.8)
A 		69.2
(-3)
A 		252
C 301
(2.3)
P 		330.7
(3)
P 		292.2
(2)
P 		160.7
(-1.2)
M 		112.8
(-2.4)
A 		89.2
(-3)
A 		242
avr 300
(1.7) 		362.4
(3) 		219.9
(0.1) 		222.1
(0.1) 		106.7
(-2.3) 		71.2
(-3) 		291
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 157.2
(3)
P 		23.1
(-3)
A 		24.8
(-2.9)
A 		40.7
(-2.2)
P 		134
B 133.6
(3)
P 		48
(-1.7)
A 		23.8
(-3)
A 		66.4
(-0.7)
P 		110
C 145.8
(3)
P 		43.4
(-2.6)
A 		43.9
(-2.5)
A 		35.2
(-3)
P 		111
avr 145.5
(3) 		38.2
(-2.6) 		30.8
(-3) 		47.4
(-2.1) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 51.3
(-1.5)
P 		160.7
(3)
P 		39.5
(-1.9)
P 		84.5
(-0.1)
P 		25.9
(-2.5)
A 		13.4
(-3)
A 		147
B 111.6
(3)
P 		101.4
(2.3)
P 		45.2
(-1.6)
P 		45.6
(-1.6)
P 		49.3
(-1.4)
A 		25.8
(-3)
A 		86
C 111.6
(3)
P 		100.9
(2.2)
P 		74.4
(0.3)
P 		32.3
(-2.8)
M 		36.5
(-2.5)
A 		29.9
(-3)
A 		82
avr 91.5
(1.2) 		121
(3) 		53
(-1.2) 		54.1
(-1.1) 		37.2
(-2.1) 		23
(-3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189320_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18297
Sequence Type Exemplar sequence
Representative Public ID Y41G9A.3 NCBI
Target Description Y41G9A.3 /REP_DB=WormBase Gene ID /WP=CE24271 /TR=Q9N501 /GB=AAF60550.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076108(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076108 NCBI Caenorhabditis elegans Y41G9A.3 (Y41G9A.3) mRNA, complete cds. 11/11 None
GENEFINDER00000022740 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2976464:2980893:1 11/11 None
SNAP00000022734 ENSEMBL cdna:SNAP chromosome:CEL140:X:2978770:2980893:1 11/11 None
Y41G9A.3 ENSEMBL cdna:known chromosome:CEL140:X:2976464:2980893:1 gene:Y41G9A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2976463-2980893(+) 96.14 100.0
Public Domain and Genome References
Gene Title protein kinase
Ensembl Y41G9A.3
Entrez Gene 189836 Entrez gene
SwissProt Q9N501 EMBL-EBI
WormBase CE35802 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508509 Y41G9A.3 [Caenorhabditis elegans] gb|AAF60550.3| Hypothetical protein Y41G9A.3 [Caenorhabditis elegans] 0.0
blast CAE58808 Hypothetical protein CBG02015 [Caenorhabditis briggsae] 0.0
blast NP_508509 Y41G9A.3 [Caenorhabditis elegans] gb|AAF60550.3| Hypothetical protein Y41G9A.3 [Caenorhabditis elegans] 1.0E-151
blast CAE58808 Hypothetical protein CBG02015 [Caenorhabditis briggsae] 1.0E-133
blast AAK18981 Hypothetical protein T20F7.6 [Caenorhabditis elegans] ref|NP_510725.1| T20F7.6 [Caenorhabditis elegans] 1.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR000644 EMBL-EBI CBS domain 0.072
Pfam IPR000644 EMBL-EBI CBS domain 2.4E-7
Pfam IPR000644 EMBL-EBI CBS domain 3.6E-6
Pfam IPR000644 EMBL-EBI CBS domain 3.4E-9
Pfam IPR000644 EMBL-EBI CBS domain 2.4E-7
Pfam IPR000644 EMBL-EBI CBS domain 3.6E-6
Pfam IPR000644 EMBL-EBI CBS domain 3.4E-9
Sequence
Target Sequence 
>C. ELEGANS:189320_AT
tttcgcgctgttgaattgctcactaaatatagaattcatcgacttcccgtcatggatgag
aagacgggagattgtgcgtacatattgacacatcgtaggatattacactacatttggaag
cattgtgctctactaccaaagccggaatgtttgagtcaacgagtagtggacctggaaata
ggatcgtggaaaaacttgatatttgcaaacgaacaaacaccgctgatcgaatgcctcgac
atgttgattgacaataacatcagtggtattccaatagttcagaaaaatactttgaaagtt
cttgaagtgtacaccagatttgacgccgcgtcagccgcattttccgaccacattgatctc
agtgtttctgtaaccagagcaattcaagaaagagactatcaaaatggaattcgtcgtgat
ggagttgtcactgcaaactacactaccactttatggtccctcattgaaattttcatcgac
aaaaacgttcatcggatttttatggttgacgaccgcacaattctgaaaggaataatttca
ttgtccgatgtgatagaattcctggttctccgtcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCGCGCTGTTGAATTGCTCACTA 207 671 739 Antisense
ATAGAATTCATCGACTTCCCGTCAT 365 21 767 Antisense
GCATTGTGCTCTACTACCAAAGCCG 483 307 858 Antisense
ACAAACACCGCTGATCGAATGCCTC 670 111 951 Antisense
GAATGCCTCGACATGTTGATTGACA 599 329 967 Antisense
GAAGTGTACACCAGATTTGACGCCG 315 335 1042 Antisense
ATTTTCCGACCACATTGATCTCAGT 67 13 1077 Antisense
GTTGTCACTGCAAACTACACTACCA 533 437 1162 Antisense
TACACTACCACTTTATGGTCCCTCA 526 641 1177 Antisense
TATGGTTGACGACCGCACAATTCTG 207 655 1239 Antisense
TGATAGAATTCCTGGTTCTCCGTCC 413 565 1289 Antisense
Sequence Source Affymetrix Proprietary Database