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[189319_at] Yeast Chl2p like

Description K08F4.1 /REP_DB=WormBase Gene ID /WP=CE06149 /TR=Q21350 /GB=CAA93081.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast Chl2p like
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 76      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 82      6grp_total > 67      4grp_total > 23      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 267
1 2 3 4 range
A 445.5
(2)
P 		332.4
(-1.4)
P 		279.5
(-3)
P 		479.4
(3)
P 		200
B 538.5
(3)
P 		288.2
(-2.8)
P 		279.1
(-3)
P 		426
(0.4)
P 		259
C 537
(3)
P 		271.8
(-3)
P 		310.2
(-2.1)
P 		456.2
(1.2)
P 		265
avr 507
(3) 		297.5
(-2.8) 		289.6
(-3) 		453.9
(1.5) 		217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 263.6
(-2.2)
P 		251.4
(-3)
P 		347.2
(3)
P 		295.5
(-0.2)
P 		322.3
(1.4)
P 		302.9
(0.2)
P 		96
B 276.2
(-2.9)
P 		316.3
(-1.2)
P 		300.3
(-1.8)
P 		303.9
(-1.7)
P 		272.9
(-3)
P 		415.8
(3)
P 		143
C 331.3
(-1.1)
P 		337.8
(-0.9)
P 		289.6
(-2.2)
P 		259.3
(-3)
P 		280.3
(-2.5)
P 		488.6
(3)
P 		229
avr 290.4
(-2.8) 		301.8
(-2.2) 		312.4
(-1.6) 		286.2
(-3) 		291.8
(-2.7) 		402.4
(3) 		116
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 162.2
(3)
P 		72.2
(-2.9)
P 		73.1
(-2.8)
P 		70.2
(-3)
P 		92
B 171.7
(3)
P 		71.2
(-2.6)
P 		64.7
(-3)
P 		90.8
(-1.5)
P 		107
C 177.8
(3)
P 		78.2
(-2.9)
P 		108.1
(-1.1)
P 		76.9
(-3)
P 		101
avr 170.6
(3) 		73.9
(-3) 		82
(-2.5) 		79.3
(-2.7) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 48.6
(-3)
P 		89.4
(2)
P 		75.6
(0.3)
P 		74.9
(0.2)
P 		97.3
(3)
P 		73.7
(0.1)
P 		49
B 96.1
(-1.3)
P 		105.3
(-0.6)
P 		72.9
(-3)
P 		80.5
(-2.4)
P 		110.9
(-0.2)
P 		155.1
(3)
P 		82
C 122.8
(0.8)
P 		103.1
(-0.3)
P 		73.7
(-1.8)
P 		52.2
(-3)
P 		90.7
(-0.9)
P 		163.6
(3)
P 		111
avr 89.2
(-1.1) 		99.3
(-0.1) 		74.1
(-2.5) 		69.2
(-3) 		99.6
(-0) 		130.8
(3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189319_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8625
Sequence Type Exemplar sequence
Representative Public ID K08F4.1 NCBI
Target Description K08F4.1 /REP_DB=WormBase Gene ID /WP=CE06149 /TR=Q21350 /GB=CAA93081.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast Chl2p like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069440(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069440 NCBI Caenorhabditis elegans K08F4.1 (K08F4.1) mRNA, complete cds. 11/11 None
SNAP00000005854 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10122654:10126609:-1 11/11 None
GENEFINDER00000005871 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10122654:10126609:-1 11/11 None
K08F4.1.3 ENSEMBL cdna:known chromosome:CEL140:IV:10122091:10126615:-1 gene:K08F4.1 11/11 None
K08F4.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:10122469:10126615:-1 gene:K08F4.1 11/11 None
K08F4.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:10122469:10126646:-1 gene:K08F4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10122659-10126615(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast Chl2p like
Ensembl K08F4.1
Entrez Gene 177879 Entrez gene
SwissProt Q21350 EMBL-EBI
WormBase CE06149 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264600_AT AAA-type ATPase family protein at
ATGENOME1:17671_AT AAA-type ATPase family protein at
CANINE:1603519_AT similar to CTF18, chromosome transmission fidelity factor 18 homolog cfa
CANINE_2:CFAAFFX.29986.1.S1_AT similar to CTF18, chromosome transmission fidelity factor 18 homolog cfa
DROSOPHILA_2:1627253_AT cutlet dm
CHICKEN:GGA.5974.1.S1_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) gga
CHICKEN:GGAAFFX.13117.1.S1_S_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) gga
U133_X3P:HS.153850.0.S1_3P_A_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:226569_S_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) hs
HG-U133B:226569_S_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) hs
HG-U95E:90566_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) hs
MOE430A:1452098_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) mm
MOUSE430A_2:1452098_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) mm
MOUSE430_2:1452098_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) mm
MOE430B:1447282_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) (Chtf18), mRNA mm
MOUSE430_2:1447282_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) (Chtf18), mRNA mm
MU19KSUBB:TC30095_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) (Chtf18), mRNA mm
MU19KSUBB:TC30095_G_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) (Chtf18), mRNA mm
RAE230A:1390640_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) (predicted) rn
RAT230_2:1390640_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) (predicted) rn
YEAST_2:1771500_AT Subunit of a complex with Ctf8p that shares some subunits with Replication Factor C and is required for sister chromatid cohesion; may have overlapping functions with Rad24p in the DNA damage replication checkpoint Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93081 Hypothetical protein K08F4.1 [Caenorhabditis elegans] ref|NP_501841.1| K08F4.1 [Caenorhabditis elegans] 0.0
blast CAE59931 Hypothetical protein CBG03417 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 1.2E-9
Sequence
Target Sequence 
>C. ELEGANS:189319_AT
tcagcgcagttcgatcatgtggacaatcgactagaggtgcaccaaaaaaagagcttttgc
tggatattttgccattcattgtcaatattgttcagccacctatcaaaccgatgaatgagt
cattgtataatcaacgggaacttgcgactttcaatcaaactgtctcgattatgtgtgatt
atggtttgacatacactgccacaatggtaaaagatcaagttaattggttatttactcctt
caattgatattttgacaatgtttccactggatggaccaaagcggccgtatcttgccaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGCGCAGTTCGATCATGTGGACA 704 623 1985 Antisense
GGACAATCGACTAGAGGTGCACCAA 534 525 2005 Antisense
GGATATTTTGCCATTCATTGTCAAT 67 511 2046 Antisense
TGTCAATATTGTTCAGCCACCTATC 393 559 2064 Antisense
CAGCCACCTATCAAACCGATGAATG 571 201 2077 Antisense
AATCAACGGGAACTTGCGACTTTCA 661 167 2113 Antisense
GCGACTTTCAATCAAACTGTCTCGA 2 289 2128 Antisense
ATGGTTTGACATACACTGCCACAAT 317 51 2165 Antisense
TTGGTTATTTACTCCTTCAATTGAT 588 695 2208 Antisense
TCCACTGGATGGACCAAAGCGGCCG 143 587 2247 Antisense
CCAAAGCGGCCGTATCTTGCCAATG 555 275 2260 Antisense
Sequence Source Affymetrix Proprietary Database