[Home] | [Total List]

[189315_at] cytochrome p450

Description K09A11.2 /REP_DB=WormBase Gene ID /WP=CE03473 /TR=Q27506 /GB=CAA90616.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=cytochrome p450
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 84      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 91      6grp_total > 75      4grp_total > 33      6grp_cgc > 67      6grp_cgc_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 55.4
(-3)
P 		72.2
(1.7)
P 		75.9
(2.7)
P 		77
(3)
P 		22
B 53.1
(-3)
P 		92.4
(3)
P 		75.4
(0.4)
P 		78.9
(0.9)
P 		39
C 45.6
(-3)
P 		110.7
(3)
P 		75.9
(-0.2)
P 		100.6
(2.1)
P 		65
avr 51.4
(-3) 		91.8
(3) 		75.7
(0.6) 		85.5
(2.1) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 99.4
(-3)
P 		116.7
(-2.3)
P 		144.9
(-1.2)
P 		249.1
(3)
P 		150.2
(-1)
P 		243
(2.8)
P 		150
B 147.7
(-2)
P 		128.9
(-3)
P 		161.1
(-1.3)
P 		194.4
(0.5)
P 		146.8
(-2.1)
P 		242
(3)
P 		113
C 143.9
(-1.1)
P 		93.1
(-3)
P 		180.9
(0.2)
P 		207.8
(1.2)
P 		132.6
(-1.5)
P 		255.8
(3)
P 		163
avr 130.3
(-2.2) 		112.9
(-3) 		162.3
(-0.8) 		217.1
(1.7) 		143.2
(-1.6) 		246.9
(3) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 20.2
(3)
P 		15.7
(-0)
P 		19.9
(2.8)
P 		11.3
(-3)
P 		9
B 16.9
(-2.9)
P 		22.8
(3)
P 		17.5
(-2.3)
P 		16.8
(-3)
P 		6
C 15.1
(-3)
P 		31.8
(3)
P 		26.5
(1.1)
P 		17
(-2.3)
P 		17
avr 17.4
(-1.3) 		23.4
(3) 		21.3
(1.5) 		15
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 18.3
(-3)
P 		41.5
(0.1)
P 		31.6
(-1.2)
P 		63.2
(3)
P 		45.3
(0.6)
P 		59.2
(2.5)
P 		45
B 51.4
(-1.6)
P 		42.9
(-2.6)
P 		39.1
(-3)
P 		51.5
(-1.5)
P 		59.6
(-0.6)
P 		90.3
(3)
P 		51
C 53.3
(-0.4)
P 		28.4
(-3)
P 		46.1
(-1.1)
P 		41.8
(-1.6)
P 		42.9
(-1.5)
P 		85.6
(3)
P 		57
avr 41
(-2.5) 		37.6
(-3) 		38.9
(-2.8) 		52.2
(-0.9) 		49.3
(-1.3) 		78.4
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189315_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17458
Sequence Type Exemplar sequence
Representative Public ID K09A11.2 NCBI
Target Description K09A11.2 /REP_DB=WormBase Gene ID /WP=CE03473 /TR=Q27506 /GB=CAA90616.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=cytochrome p450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077802(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077802 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-14A1) (cyp-14A1) mRNA, complete cds. 11/11 None
SNAP00000010025 ENSEMBL cdna:SNAP chromosome:CEL140:X:13265001:13267258:-1 11/11 None
GENEFINDER00000010031 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13265001:13267258:-1 11/11 None
K09A11.2 ENSEMBL cdna:known chromosome:CEL140:X:13265001:13267258:-1 gene:K09A11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13265000-13267258(-) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome p450
Gene Symbol cyp-14A1
Ensembl K09A11.2
Entrez Gene 187183 Entrez gene
SwissProt Q27506 EMBL-EBI
WormBase CE03473 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15195_S_AT trans-cinnamate 4-monooxygenase / cinnamic acid 4-hydroxylase (C4H) (CA4H) / cytochrome P450 73 (CYP73) (CYP73A5) at
ATGENOME1:12480_S_AT trans-cinnamate 4-monooxygenase / cinnamic acid 4-hydroxylase (C4H) (CA4H) / cytochrome P450 73 (CYP73) (CYP73A5) at
ATH1-121501:267470_AT trans-cinnamate 4-monooxygenase / cinnamic acid 4-hydroxylase (C4H) (CA4H) / cytochrome P450 73 (CYP73) (CYP73A5) at
CANINE_2:CFAAFFX.4104.1.S1_AT similar to cytochrome P450, family 2, subfamily K, polypeptide 6 cfa
CHICKEN:GGAAFFX.25034.1.S1_S_AT similar to MGC68696 protein gga
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90616 Hypothetical protein K09A11.2 [Caenorhabditis elegans] ref|NP_510203.1| CYtochrome P450 family member (cyp-14A1) [Caenorhabditis elegans] 0.0
blast CAE61409 Hypothetical protein CBG05272 [Caenorhabditis briggsae] 0.0
blast CAA90615 Hypothetical protein K09A11.3 [Caenorhabditis elegans] ref|NP_510204.1| CYtochrome P450 family member (cyp-14A2) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-137
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-151
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 2.2E-120
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.9E-109
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510203.1 1 2-21
K09A11.2 1 2-21
GENEFINDER00000010031 1 2-21
Sequence
Target Sequence 
>C. ELEGANS:189315_AT
agttctcgatttttggttagctggcatggagaccacatcaaattctcttcgctggcattt
ggcatttatgatgaaatatccagaagttcaagataaagtcagaaaagaaatactggacaa
tgttggaacagcacgtttgccatcaatgtcagataaaccaaatatgccatatactcaagc
agtgatccatgaagtgcagcgatgttctaacatgattcctttcttggggtctcatcagtg
caaagaggaaactgaaattcacggaaacagagttccagctggttcattagtttttgcgca
attgtggtcagtgatgagaaatgacacagtgtttgaagatccagaaacattcaatccaag
ccgctacttacaatccgatgggaaaacgtttgataaggctgttcttgaaaaaacgatccc
ctttagtattggaaaaagaaactgtgttggagaagggcttgcaagaatggaactattcct
gattttcagtgcactaattcagaagtatgagtttgttgccacttctaatattgacttgac
tccagattgggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTCTCGATTTTTGGTTAGCTGGC 390 63 885 Antisense
GGTTAGCTGGCATGGAGACCACATC 556 505 899 Antisense
AGACCACATCAAATTCTCTTCGCTG 224 71 914 Antisense
GAACAGCACGTTTGCCATCAATGTC 74 353 1010 Antisense
GTTCTAACATGATTCCTTTCTTGGG 529 443 1088 Antisense
CTTTCTTGGGGTCTCATCAGTGCAA 400 223 1103 Antisense
CCAGCTGGTTCATTAGTTTTTGCGC 566 273 1159 Antisense
CAGAAACATTCAATCCAAGCCGCTA 430 205 1226 Antisense
AAGCCGCTACTTACAATCCGATGGG 544 149 1242 Antisense
GTATGAGTTTGTTGCCACTTCTAAT 415 455 1389 Antisense
ATATTGACTTGACTCCAGATTGGGG 65 19 1412 Antisense
Sequence Source Affymetrix Proprietary Database