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[189310_at] Thaumatin family

Description F49A5.6 /REP_DB=WormBase Gene ID /WP=CE16069 /TR=O45533 /GB=CAB04418.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Thaumatin family
Cluster 6grp_total > 19      4grp_total > 25      6grp_cgc > 90      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 2.9
(-3)
A 		14.2
(-2.1)
A 		44.1
(0.2)
A 		79.6
(3)
A 		77
B 2.5
(-2.9)
A 		59.3
(3)
A 		5.8
(-2.6)
A 		2
(-3)
A 		57
C 20.8
(-0.9)
A 		9
(-3)
A 		24.3
(-0.3)
A 		43.5
(3)
A 		35
avr 8.7
(-3) 		27.5
(0.4) 		24.7
(-0.1) 		41.7
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 53.4
(3)
A 		5.2
(-2.8)
A 		7.3
(-2.5)
A 		23.1
(-0.6)
A 		38.6
(1.2)
A 		3.4
(-3)
A 		50
B 19.1
(0.7)
A 		10.5
(-1.7)
A 		27.7
(3)
A 		5.7
(-3)
A 		16.3
(-0.1)
A 		22.9
(1.7)
A 		22
C 4.7
(-3)
A 		19.8
(-0.4)
A 		40.1
(3)
A 		17.4
(-0.8)
A 		14.9
(-1.3)
A 		16.5
(-1)
A 		35
avr 25.7
(3) 		11.8
(-3) 		25
(2.7) 		15.4
(-1.4) 		23.3
(2) 		14.3
(-1.9) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1
(-3)
A 		3.1
(-1.8)
A 		11.5
(2.9)
A 		11.7
(3)
A 		11
B 0.8
(-2.8)
A 		14.7
(3)
A 		1.3
(-2.6)
A 		0.4
(-3)
A 		14
C 6.9
(1.4)
A 		2.6
(-3)
A 		8.5
(3)
A 		7.3
(1.8)
A 		6
avr 2.9
(-3) 		6.8
(2.6) 		7.1
(3) 		6.5
(2.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 9.8
(2)
A 		1.9
(-2.4)
A 		1.6
(-2.6)
A 		5.9
(-0.2)
A 		11.6
(3)
A 		0.8
(-3)
A 		11
B 6.6
(1.3)
A 		3.5
(-1.3)
A 		6.7
(1.4)
A 		1.5
(-3)
A 		6.6
(1.3)
A 		8.6
(3)
A 		7
C 1.7
(-3)
A 		6
(0)
A 		10.2
(3)
A 		3.5
(-1.7)
A 		4.8
(-0.8)
A 		5.5
(-0.3)
A 		9
avr 6
(0.5) 		3.8
(-2.7) 		6.2
(0.8) 		3.6
(-3) 		7.7
(3) 		5
(-1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189310_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13553
Sequence Type Exemplar sequence
Representative Public ID F49A5.6 NCBI
Target Description F49A5.6 /REP_DB=WormBase Gene ID /WP=CE16069 /TR=O45533 /GB=CAB04418.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Thaumatin family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074862(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074862 NCBI Caenorhabditis elegans THaumatiN family member (thn-4) (thn-4) mRNA, complete cds. 11/11 None
SNAP00000001318 ENSEMBL cdna:SNAP chromosome:CEL140:V:16873323:16874068:-1 11/11 None
GENEFINDER00000001324 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16870259:16874068:-1 11/11 None
F49A5.6 ENSEMBL cdna:known chromosome:CEL140:V:16873323:16874068:-1 gene:F49A5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16873322-16874068(-) 100.0 100.0
Public Domain and Genome References
Gene Title Thaumatin family
Gene Symbol thn-4
Ensembl F49A5.6
Entrez Gene 186006 Entrez gene
SwissProt O45533 EMBL-EBI
WormBase CE16069 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:20384_AT pathogenesis-related thaumatin family protein at
ATH1-121501:253104_AT pathogenesis-related thaumatin family protein at
Protein Similarities
Method ID Description E-Value
blast CAB04419 Hypothetical protein F49A5.7 [Caenorhabditis elegans] ref|NP_507262.2| C-type LECtin family member (clec-33) [Caenorhabditis elegans] 0.0
blast T22397 hypothetical protein F49A5.7 - Caenorhabditis elegans 1.0E-171
blast CAB04418 Hypothetical protein F49A5.6 [Caenorhabditis elegans] ref|NP_507263.1| THaumatiN family member (thn-4) [Caenorhabditis elegans] 1.0E-130
blast CAB04418 Hypothetical protein F49A5.6 [Caenorhabditis elegans] ref|NP_507263.1| THaumatiN family member (thn-4) [Caenorhabditis elegans] 1.0E-123
blast CAA94598 Hypothetical protein F28D1.3 [Caenorhabditis elegans] ref|NP_502360.1| THaumatiN family member (thn-1) [Caenorhabditis elegans] 6.0E-97
blast CAE59849 Hypothetical protein CBG03322 [Caenorhabditis briggsae] 1.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR001938 EMBL-EBI Thaumatin, pathogenesis-related 8.6E-100
Pfam IPR001304 EMBL-EBI C-type lectin 3.4E-11
Pfam IPR001304 EMBL-EBI C-type lectin 1.8E-5
Pfam IPR001938 EMBL-EBI Thaumatin, pathogenesis-related 3.0E-96
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000001324 2 229-251,277-299
Sequence
Target Sequence 
>C. ELEGANS:189310_AT
cacgcttcactctgaacattccagagatatcactgtgagcgattcatggacagctggaag
aatatgggctagaaccggatgtgatgcaaacttcaactgcgagacaggattctgtggaaa
ctcagaacagtgtaacggagctggaggtgtcccaccagcttcccttgctgaattcacatt
gaacggccgtgcgggacaagacttttatgatgtgtcaatggtcgatggatataatattcc
agtttttatccaaccacatggtgtatctggatgtcaccgtgctggaggatgtgtcacaga
tatgaacgccaattgcccaggcgatcttattgtgagaggacgcgatggaagagttgtcgc
ttgtaaatctgcatgcctcaaataccagtcagatcgagaatgctgtcgtaatgaatacaa
caatccaagaacgtgtacccgttctgcacttgctcagcttttcaagaatgcgtgcccgac
agcgtactcctacgcttacgacgacgcgagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACGCTTCACTCTGAACATTCCAGA 285 199 153 Antisense
TTCACATTGAACGGCCGTGCGGGAC 579 683 325 Antisense
ATTCCAGTTTTTATCCAACCACATG 476 7 388 Antisense
TGTATCTGGATGTCACCGTGCTGGA 229 561 414 Antisense
CAGATATGAACGCCAATTGCCCAGG 227 207 449 Antisense
ATTGCCCAGGCGATCTTATTGTGAG 321 7 464 Antisense
GCATGCCTCAAATACCAGTCAGATC 662 309 523 Antisense
AAGAACGTGTACCCGTTCTGCACTT 296 153 579 Antisense
TTCTGCACTTGCTCAGCTTTTCAAG 143 695 594 Antisense
TTTCAAGAATGCGTGCCCGACAGCG 231 673 612 Antisense
CTCCTACGCTTACGACGACGCGAGT 337 231 639 Antisense
Sequence Source Affymetrix Proprietary Database