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[189309_at] cytochrome P450

Description F41B5.2 /REP_DB=WormBase Gene ID /WP=CE10218 /TR=O16673 /GB=AAG24100.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 09      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 80      6grp_total > 03      4grp_total > 05      6grp_cgc > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 233
1 2 3 4 range
A 171.9
(-0.1)
P 		124.2
(-1.5)
P 		72.9
(-3)
P 		274.7
(3)
P 		202
B 179.7
(-0.1)
P 		85.3
(-3)
P 		115.3
(-2.1)
P 		281.6
(3)
P 		196
C 182.1
(0.7)
P 		48.9
(-3)
P 		120.1
(-1)
P 		262.9
(3)
P 		214
avr 177.9
(-0.1) 		86.1
(-3) 		102.8
(-2.5) 		273.1
(3) 		187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 217
1 2 3 4 5 6 range
A 256.5
(2)
P 		210.8
(0.5)
P 		224.1
(1)
P 		288.7
(3)
P 		250.4
(1.8)
P 		99.2
(-3)
P 		190
B 315.7
(3)
P 		248.7
(0.3)
P 		261.8
(0.9)
P 		280.1
(1.6)
P 		310
(2.8)
P 		164.9
(-3)
P 		151
C 252.2
(2.5)
P 		265.3
(3)
P 		219.9
(1.2)
P 		225.1
(1.4)
P 		230.4
(1.6)
P 		116.3
(-3)
P 		149
avr 274.8
(3) 		241.6
(1.7) 		235.3
(1.4) 		264.6
(2.6) 		263.6
(2.5) 		126.8
(-3) 		148
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 62.6
(3)
P 		27
(-1.9)
P 		19.1
(-3)
P 		40.2
(-0.1)
P 		44
B 57.3
(2.6)
P 		21.1
(-3)
P 		26.7
(-2.1)
P 		60
(3)
P 		39
C 60.3
(3)
P 		14.1
(-3)
P 		41.9
(0.6)
P 		44.3
(0.9)
P 		46
avr 60.1
(3) 		20.7
(-3) 		29.2
(-1.7) 		48.2
(1.2) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 47.3
(-0.3)
P 		75
(2.9)
P 		48.8
(-0.1)
P 		73.2
(2.7)
P 		75.6
(3)
P 		24.1
(-3)
P 		52
B 109.8
(1.5)
P 		82.8
(-1)
P 		63.6
(-2.8)
P 		74.2
(-1.8)
P 		125.9
(3)
P 		61.5
(-3)
P 		64
C 93.5
(3)
P 		81
(1.6)
P 		56
(-1.1)
P 		45.3
(-2.3)
P 		74.5
(0.9)
P 		38.9
(-3)
P 		55
avr 83.5
(2) 		79.6
(1.5) 		56.1
(-1.3) 		64.2
(-0.3) 		92
(3) 		41.5
(-3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189309_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14854
Sequence Type Exemplar sequence
Representative Public ID F41B5.2 NCBI
Target Description F41B5.2 /REP_DB=WormBase Gene ID /WP=CE10218 /TR=O16673 /GB=AAG24100.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071217(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071217 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-33C7) (cyp-33C7) mRNA, complete cds. 11/11 None
SNAP00000036003 ENSEMBL cdna:SNAP chromosome:CEL140:V:2250376:2252352:1 11/11 None
GENEFINDER00000036011 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2250376:2252352:1 11/11 None
F41B5.2 ENSEMBL cdna:known chromosome:CEL140:V:2250376:2252243:1 gene:F41B5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2250375-2252243(+) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-33C7
Ensembl F41B5.2
Entrez Gene 185589 Entrez gene
SwissProt O16673 EMBL-EBI
WormBase CE10218 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1591935_AT cytochrome P450 2E1 cfa
CANINE:1582405_AT cytochrome P450 2E1 cfa
CANINE_2:CFA.648.1.S1_S_AT cytochrome P450 2E1 cfa
CANINE_2:CFA.15532.1.A1_AT Cytochrome P450 2E1 cfa
CANINE:1595042_X_AT Cytochrome P450 2E1 cfa
CANINE:1601076_AT Cytochrome P450 2E1 cfa
CANINE:1595040_S_AT Cytochrome P450 2E1 cfa
CANINE:1595041_S_AT Cytochrome P450 2E1 cfa
CANINE:1586872_AT Cytochrome P450 2E1 cfa
HG-U133_PLUS_2:209975_AT cytochrome P450, family 2, subfamily E, polypeptide 1 hs
HG-U133A:209975_AT cytochrome P450, family 2, subfamily E, polypeptide 1 hs
HG-U133A_2:209975_AT cytochrome P450, family 2, subfamily E, polypeptide 1 hs
HG-U133A:209976_S_AT cytochrome P450, family 2, subfamily E, polypeptide 1 hs
HG-U133_PLUS_2:209976_S_AT cytochrome P450, family 2, subfamily E, polypeptide 1 hs
HG-U133A_2:209976_S_AT cytochrome P450, family 2, subfamily E, polypeptide 1 hs
HUGENEFL:J02843_AT cytochrome P450, family 2, subfamily E, polypeptide 1 hs
U133_X3P:G6470140_3P_AT cytochrome P450, family 2, subfamily E, polypeptide 1 hs
U133_X3P:J02843CDS_3P_S_AT cytochrome P450, family 2, subfamily E, polypeptide 1 hs
U133_X3P:209975_3P_AT cytochrome P450, family 2, subfamily E, polypeptide 1 hs
HG-U95AV2:40379_AT cytochrome P450, family 2, subfamily E, polypeptide 1 hs
HG-U95AV2:1431_AT cytochrome P450, family 2, subfamily E, polypeptide 1 hs
HC-G110:1431_AT cytochrome P450, family 2, subfamily E, polypeptide 1 hs
HG-U133A:1431_AT cytochrome P450, family 2, subfamily E, polypeptide 1 hs
HG-U133_PLUS_2:1431_AT cytochrome P450, family 2, subfamily E, polypeptide 1 hs
HG-FOCUS:1431_AT cytochrome P450, family 2, subfamily E, polypeptide 1 hs
HG-U133A_2:1431_AT cytochrome P450, family 2, subfamily E, polypeptide 1 hs
HG-U133_PLUS_2:222100_AT Cytochrome P450, family 2, subfamily E, polypeptide 1 hs
HG-U133A_2:222100_AT Cytochrome P450, family 2, subfamily E, polypeptide 1 hs
HG-U133A:222100_AT Cytochrome P450, family 2, subfamily E, polypeptide 1 hs
HG-U95D:75592_AT Cytochrome P450, family 2, subfamily E, polypeptide 1 hs
HUGENEFL:H46990_AT Cytochrome P450, family 2, subfamily E, polypeptide 1 hs
U133_X3P:HS.75183.1.A1_3P_AT Cytochrome P450, family 2, subfamily E, polypeptide 1 hs
MOE430A:1415994_AT cytochrome P450, family 2, subfamily e, polypeptide 1 mm
MOUSE430_2:1415994_AT cytochrome P450, family 2, subfamily e, polypeptide 1 mm
MOUSE430A_2:1415994_AT cytochrome P450, family 2, subfamily e, polypeptide 1 mm
MU11KSUBA:M30844_S_AT cytochrome P450, family 2, subfamily e, polypeptide 1 mm
MU11KSUBB:MSA.27233.0_S_AT cytochrome P450, family 2, subfamily e, polypeptide 1 mm
MG-U74AV2:93996_AT cytochrome P450, family 2, subfamily e, polypeptide 1 mm
MG-U74BV2:105092_AT Cytochrome P450, family 2, subfamily e, polypeptide 1, mRNA (cDNA clone MGC:18528 IMAGE:4223797) mm
MU19KSUBA:TC22887_AT Cytochrome P450, family 2, subfamily e, polypeptide 1, mRNA (cDNA clone MGC:18528 IMAGE:4223797) mm
MU19KSUBC:TC38839_AT Cytochrome P450, family 2, subfamily e, polypeptide 1, mRNA (cDNA clone MGC:18528 IMAGE:4223797) mm
MU19KSUBC:TC38839_G_AT Cytochrome P450, family 2, subfamily e, polypeptide 1, mRNA (cDNA clone MGC:18528 IMAGE:4223797) mm
RT-U34:M20131CDS_S_AT cytochrome P450, family 2, subfamily e, polypeptide 1 rn
RG-U34A:M20131CDS_S_AT cytochrome P450, family 2, subfamily e, polypeptide 1 rn
RG-U34A:S48325_S_AT cytochrome P450, family 2, subfamily e, polypeptide 1 rn
RG-U34A:AF056333_S_AT cytochrome P450, family 2, subfamily e, polypeptide 1 rn
RG-U34C:RC_AA819450_F_AT cytochrome P450, family 2, subfamily e, polypeptide 1 rn
RG-U34C:RC_AA819450_I_AT cytochrome P450, family 2, subfamily e, polypeptide 1 rn
RAE230A:1367871_AT cytochrome P450, family 2, subfamily e, polypeptide 1 rn
RAT230_2:1367871_AT cytochrome P450, family 2, subfamily e, polypeptide 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24100 Cytochrome p450 family protein 33C7 [Caenorhabditis elegans] ref|NP_503618.1| CYtochrome P450 family member (cyp-33C7) [Caenorhabditis elegans] 0.0
blast T32036 hypothetical protein F41B5.3 - Caenorhabditis elegans 0.0
blast AAG24101 Cytochrome p450 family protein 33C5 [Caenorhabditis elegans] ref|NP_503616.1| CYtochrome P450 family member (cyp-33C5) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-150
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-156
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 3.8E-97
Pfam IPR001128 EMBL-EBI Cytochrome P450 4.4E-99
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503618.1 1 2-20
F41B5.2 1 2-20
SNAP00000036003 1 2-20
GENEFINDER00000036011 1 2-20
Sequence
Target Sequence 
>C. ELEGANS:189309_AT
aggagacactgagctattctccaataaacagctatcaaatacttgcttggacctctggtt
tgcaggattatccacaacaaatacaactgcaaactggacaatttgctatgttatgaatac
tccaggagttttagaaaaaattcacgacgagcttgataaggtggttgggagtgatagatt
ggtgacaactgctgataagaataatcttccttatatgaatgcagtgatcaatgaatctca
aagatgcacgaatattgttccgatcaatttattccatgcaaccacaagggatacagtaat
aaatggatatccagttaaaaagggaactggagtcatcgcccagattagtacagttatgct
tgatgagaaggtcttcccagaaccttataaattcaagcctgaaagatttatagatgaaag
tggaaaacttataaaagtagatgaacttgtcccattctcaattggaaagcggcaatgccc
aggcgaaggacttgccaggatggagcttttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAGACACTGAGCTATTCTCCAAT 215 55 852 Antisense
TTGCTTGGACCTCTGGTTTGCAGGA 119 679 894 Antisense
GATTATCCACAACAAATACAACTGC 626 429 917 Antisense
GCTATGTTATGAATACTCCAGGAGT 668 303 956 Antisense
GGTGGTTGGGAGTGATAGATTGGTG 641 499 1011 Antisense
GATGCACGAATATTGTTCCGATCAA 383 413 1094 Antisense
GATCAATTTATTCCATGCAACCACA 5 423 1113 Antisense
GAGAAGGTCTTCCCAGAACCTTATA 110 383 1216 Antisense
AAAAGTAGATGAACTTGTCCCATTC 268 133 1284 Antisense
GCGGCAATGCCCAGGCGAAGGACTT 653 291 1320 Antisense
GGACTTGCCAGGATGGAGCTTTTCC 68 525 1339 Antisense
Sequence Source Affymetrix Proprietary Database