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[189308_s_at] Sushi domain

Description F26C11.3 /REP_DB=WormBase Gene ID /WP=CE01561 /TR=SW:Q09550 /GB=CAA87369.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Sushi domain
Cluster 6grp_total > 53      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 41
(-3)
A 		103.8
(3)
A 		92.5
(1.9)
A 		63.3
(-0.9)
P 		63
B 44.6
(-3)
A 		69.1
(2.2)
A 		65.7
(1.5)
A 		72.7
(3)
A 		28
C 50.8
(-0.7)
A 		14
(-2.8)
A 		10.7
(-3)
A 		115.8
(3)
A 		105
avr 45.5
(-3) 		62.3
(-0.4) 		56.3
(-1.3) 		83.9
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 68.1
(1.7)
A 		7.6
(-3)
A 		84.6
(3)
A 		57.5
(0.9)
A 		31.1
(-1.2)
A 		43.7
(-0.2)
A 		77
B 56
(1.5)
A 		54.9
(1.4)
A 		71.8
(3)
A 		7.2
(-3)
A 		44.3
(0.4)
A 		41.8
(0.2)
A 		65
C 16.9
(-2.3)
A 		31.2
(-1)
A 		77.3
(3)
A 		67.3
(2.1)
A 		37.6
(-0.5)
A 		8.9
(-3)
A 		68
avr 47
(-1) 		31.2
(-3) 		77.9
(3) 		44
(-1.4) 		37.7
(-2.2) 		31.5
(-3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 14.9
(-0.7)
A 		22.5
(2.3)
A 		24.2
(3)
A 		9.3
(-3)
P 		15
B 14.2
(-3)
A 		17.1
(3)
A 		15.2
(-0.9)
A 		15.5
(-0.3)
A 		3
C 16.8
(2)
A 		4
(-2.9)
A 		3.7
(-3)
A 		19.5
(3)
A 		16
avr 15.3
(3) 		14.5
(-2.3) 		14.4
(-3) 		14.8
(-0.3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 12.6
(0.8)
A 		2.7
(-3)
A 		18.4
(3)
A 		14.6
(1.5)
A 		9.4
(-0.4)
A 		10.7
(0.1)
A 		16
B 19.5
(3)
A 		18.3
(2.6)
A 		17.4
(2.3)
A 		1.9
(-3)
A 		18
(2.5)
A 		15.6
(1.7)
A 		18
C 6.3
(-1.8)
A 		9.5
(-0.7)
A 		19.7
(3)
A 		13.5
(0.8)
A 		12.2
(0.3)
A 		3
(-3)
A 		17
avr 12.8
(-0.9) 		10.2
(-2.7) 		18.5
(3) 		10
(-2.9) 		13.2
(-0.7) 		9.8
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189308_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2952
Sequence Type Exemplar sequence
Representative Public ID F26C11.3 NCBI
Target Description F26C11.3 /REP_DB=WormBase Gene ID /WP=CE01561 /TR=SW:Q09550 /GB=CAA87369.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Sushi domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063738(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063738 NCBI Caenorhabditis elegans F26C11.3 (F26C11.3) mRNA, complete cds. 11/11 A 
SNAP00000037813 ENSEMBL cdna:SNAP chromosome:CEL140:II:9902970:9908552:-1 11/11 None
GENEFINDER00000037817 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9902970:9909056:-1 11/11 None
F26C11.3 ENSEMBL cdna:known chromosome:CEL140:II:9902970:9909056:-1 gene:F26C11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9902938-9908549(-) 100.0 100.0
Public Domain and Genome References
Gene Title Sushi domain
Ensembl F26C11.3
Entrez Gene 174545 Entrez gene
SwissProt Q09550 EMBL-EBI
WormBase CE37833 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87369 Hypothetical protein F26C11.3 [Caenorhabditis elegans] ref|NP_496139.3| F26C11.3 [Caenorhabditis elegans] sp|Q09550|YQU3_CAEEL Hypothetical protein F26C11.3 precursor 0.0
blast CAE57944 Hypothetical protein CBG00999 [Caenorhabditis briggsae] 1.0E-114
blast CAE57944 Hypothetical protein CBG00999 [Caenorhabditis briggsae] 1.0E-112
blast AAK31523 Hypothetical protein F59A6.3 [Caenorhabditis elegans] ref|NP_494923.1| F59A6.3 [Caenorhabditis elegans] 2.0E-18
Sequence
Target Sequence 
>C. ELEGANS:189308_S_AT
aactgatactatttccgattctgaaggatgtaaagcaacatcaactgccaagccaacaac
tgtaatctcatccactgctacatgctcctccctcaacctaaatctcaactcaacaacccg
cccgacgtcgtccgagattaaagattcctattcagttggagaaaagatatatcacatttg
tgaaaaagactattcatttgaaattgctctgcagcctctgaaaatatatcaatgcttgaa
tggtggagcatggtcaggaacaccggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGATACTATTTCCGATTCTGAA 201 143 3435 Antisense
AACATCAACTGCCAAGCCAACAACT 74 139 3471 Antisense
GCCAACAACTGTAATCTCATCCACT 645 277 3486 Antisense
CTGTAATCTCATCCACTGCTACATG 184 239 3494 Antisense
ACCTAAATCTCAACTCAACAACCCG 331 87 3530 Antisense
GCCCGACGTCGTCCGAGATTAAAGA 47 287 3554 Antisense
GAGATTAAAGATTCCTATTCAGTTG 703 395 3568 Antisense
ATTCATTTGAAATTGCTCTGCAGCC 617 11 3626 Antisense
AAATTGCTCTGCAGCCTCTGAAAAT 638 113 3635 Antisense
GCTTGAATGGTGGAGCATGGTCAGG 212 305 3668 Antisense
GGAGCATGGTCAGGAACACCGGAAA 480 519 3679 Antisense
Sequence Source Affymetrix Proprietary Database