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[189307_at] Sushi domain

Description F26C11.3 /REP_DB=WormBase Gene ID /WP=CE01561 /TR=SW:Q09550 /GB=CAA87369.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Sushi domain
Cluster 6grp_total > 06      4grp_total > 51      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 77.9
(-1.5)
P 		83.5
(-1)
A 		124.6
(3)
A 		62.8
(-3)
A 		62
B 62.8
(-1.8)
P 		100.9
(3)
A 		90.3
(1.7)
A 		53.5
(-3)
A 		47
C 86
(0.9)
P 		109.5
(3)
A 		41.2
(-3)
A 		58.3
(-1.5)
A 		68
avr 75.6
(-0.4) 		98
(3) 		85.4
(1.1) 		58.2
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 122.7
(3)
P 		58.9
(-1.7)
P 		72.2
(-0.7)
P 		41.1
(-3)
A 		45.4
(-2.7)
A 		43.7
(-2.8)
A 		82
B 84.4
(3)
P 		77.3
(2)
P 		47.2
(-2.3)
M 		48.7
(-2)
A 		41.9
(-3)
A 		48.3
(-2.1)
A 		43
C 88.9
(3)
P 		62.8
(-0.3)
M 		51.1
(-1.8)
A 		65.8
(0.1)
A 		47.6
(-2.2)
A 		41.3
(-3)
P 		48
avr 98.7
(3) 		66.3
(-0.6) 		56.8
(-1.6) 		51.9
(-2.2) 		45
(-2.9) 		44.4
(-3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 28.3
(1.9)
P 		18.1
(-0.7)
A 		32.6
(3)
A 		9.2
(-3)
A 		23
B 20
(0.8)
P 		24.9
(3)
A 		20.9
(1.2)
A 		11.4
(-3)
A 		14
C 28.5
(2.2)
P 		31.5
(3)
A 		14.4
(-1.7)
A 		9.8
(-3)
A 		22
avr 25.6
(3) 		24.8
(2.7) 		22.6
(1.8) 		10.1
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 22.6
(3)
P 		20.9
(2.2)
P 		15.7
(-0.4)
P 		10.4
(-3)
A 		13.7
(-1.4)
A 		10.6
(-2.9)
A 		12
B 29.4
(3)
P 		25.7
(1.8)
P 		11.4
(-3)
M 		12.9
(-2.5)
A 		17
(-1.1)
A 		18
(-0.8)
A 		18
C 32.9
(3)
P 		19.2
(-1.1)
M 		13
(-3)
A 		13.2
(-2.9)
A 		15.4
(-2.3)
A 		13.8
(-2.8)
P 		20
avr 28.3
(3) 		21.9
(0.6) 		13.4
(-2.6) 		12.2
(-3) 		15.4
(-1.8) 		14.1
(-2.3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189307_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2952
Sequence Type Exemplar sequence
Representative Public ID F26C11.3 NCBI
Target Description F26C11.3 /REP_DB=WormBase Gene ID /WP=CE01561 /TR=SW:Q09550 /GB=CAA87369.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Sushi domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063738(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063738 NCBI Caenorhabditis elegans F26C11.3 (F26C11.3) mRNA, complete cds. 9/11 A 
SNAP00000037813 ENSEMBL cdna:SNAP chromosome:CEL140:II:9902970:9908552:-1 9/11 None
GENEFINDER00000037817 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9902970:9909056:-1 9/11 None
F26C11.3 ENSEMBL cdna:known chromosome:CEL140:II:9902970:9909056:-1 gene:F26C11.3 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9902938-9908549(-) 100.0 100.0
Public Domain and Genome References
Gene Title Sushi domain
Ensembl F26C11.3
Entrez Gene 174545 Entrez gene
SwissProt Q09550 EMBL-EBI
WormBase CE37833 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87369 Hypothetical protein F26C11.3 [Caenorhabditis elegans] ref|NP_496139.3| F26C11.3 [Caenorhabditis elegans] sp|Q09550|YQU3_CAEEL Hypothetical protein F26C11.3 precursor 0.0
blast CAE57944 Hypothetical protein CBG00999 [Caenorhabditis briggsae] 1.0E-114
blast CAE57944 Hypothetical protein CBG00999 [Caenorhabditis briggsae] 1.0E-112
blast AAK31523 Hypothetical protein F59A6.3 [Caenorhabditis elegans] ref|NP_494923.1| F59A6.3 [Caenorhabditis elegans] 2.0E-18
Sequence
Target Sequence 
>C. ELEGANS:189307_AT
aaggatgtaaagccacttccagtggaacgacatcaacaatgtctcccggaacaacaggag
gaaccactgtttcgagaacaactaactcaaacaatccaatcgattcatccactctcgaaa
ccacaactttcgcctggccaactggtggaactactcggatgcttccctctggagaaatta
tcatatccgaatccttgactgcattcccgaattgcactactgttctgaaacaattggtct
acaatccaacaaccaatacgactagaactgatactatttccgattctgaaggatgtaaag
caacatcaactgccaagccaacaactgtaatctcatccactgctacatgctcctccctca
acctaaatctcaactcaacaacccgcccgacgtcgtccgagattaaagattcctattcag
ttggagaaaagatatatcacatttgtgaaaaagactattcatttgaaattgctctgcagc
ctctgaaaatatatcaatgcttgaatggtggagcatggtcaggaacaccggaaaagtgtg
ttggtacgccaccggcaaatcagagctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGATGTAAAGCCACTTCCAGTGG 2 159 3170 Antisense
ACATCAACAATGTCTCCCGGAACAA 675 105 3199 Antisense
AGGAGGAACCACTGTTTCGAGAACA 168 3 3225 Antisense
ATCCAATCGATTCATCCACTCTCGA 318 41 3263 Antisense
TCTCGAAACCACAACTTTCGCCTGG 291 611 3282 Antisense
CGCCTGGCCAACTGGTGGAACTACT 544 257 3300 Antisense
TGGTGGAACTACTCGGATGCTTCCC 495 553 3312 Antisense
ATCATATCCGAATCCTTGACTGCAT 88 31 3349 Antisense
GCATTCCCGAATTGCACTACTGTTC 464 307 3370 Antisense
GAAAAGTGTGTTGGTACGCCACCGG 473 353 3700 Antisense
GTACGCCACCGGCAAATCAGAGCTC 497 457 3713 Antisense
Sequence Source Affymetrix Proprietary Database