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[189306_at]

Description F41B5.5 /REP_DB=WormBase Gene ID /WP=CE10224 /TR=O16668 /GB=AAG24102.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_total > 67      4grp_total > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 24.4
(-3)
A 		30.2
(1)
A 		28.1
(-0.4)
A 		33.1
(3)
A 		9
B 40.3
(1.7)
A 		33.1
(-3)
A 		34.3
(-2.2)
A 		42.3
(3)
A 		9
C 50.4
(-1.5)
A 		27.3
(-3)
A 		33.8
(-2.6)
A 		117.3
(3)
A 		90
avr 38.4
(-1.6) 		30.2
(-3) 		32.1
(-2.7) 		64.2
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 17.1
(-1.4)
A 		28.8
(0.9)
A 		19.8
(-0.9)
A 		33.3
(1.8)
A 		8.9
(-3)
A 		39.5
(3)
A 		31
B 27.8
(1.7)
A 		23
(0.6)
A 		33
(2.9)
A 		6.9
(-3)
A 		33.5
(3)
A 		26.4
(1.4)
A 		27
C 29.6
(0.4)
A 		8.1
(-3)
A 		38.8
(1.9)
A 		23.9
(-0.5)
A 		23.7
(-0.5)
A 		45.5
(3)
A 		37
avr 24.8
(-1.3) 		20
(-3) 		30.5
(0.7) 		21.4
(-2.5) 		22
(-2.3) 		37.1
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 8.9
(3)
A 		6.6
(-0.5)
A 		7.3
(0.6)
A 		4.9
(-3)
A 		4
B 12.9
(3)
A 		8.2
(-2.8)
A 		8
(-3)
A 		9
(-1.8)
A 		5
C 16.7
(1.5)
A 		7.8
(-3)
A 		11.8
(-1)
A 		19.8
(3)
A 		12
avr 12.8
(3) 		7.5
(-3) 		9
(-1.3) 		11.2
(1.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.2
(-2.6)
A 		10.2
(3)
A 		4.3
(-1.7)
A 		8.4
(1.6)
A 		2.7
(-3)
A 		9.6
(2.5)
A 		8
B 9.7
(1)
A 		7.7
(0)
A 		8
(0.2)
A 		1.8
(-3)
A 		13.6
(3)
A 		9.9
(1.1)
A 		12
C 11
(1)
A 		2.5
(-3)
A 		9.9
(0.5)
A 		4.8
(-1.9)
A 		7.7
(-0.5)
A 		15.2
(3)
A 		13
avr 8
(-0.3) 		6.8
(-1.4) 		7.4
(-0.8) 		5
(-3) 		8
(-0.3) 		11.6
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189306_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15345
Sequence Type Exemplar sequence
Representative Public ID F41B5.5 NCBI
Target Description F41B5.5 /REP_DB=WormBase Gene ID /WP=CE10224 /TR=O16668 /GB=AAG24102.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000035999 ENSEMBL cdna:SNAP chromosome:CEL140:V:2242302:2242592:1 None
SNAP00000035998 ENSEMBL cdna:SNAP chromosome:CEL140:V:2241973:2242281:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2238138-2242592(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T32033 hypothetical protein F41B5.5 - Caenorhabditis elegans 1.0E-51
blast AAG24101 Cytochrome p450 family protein 33C5 [Caenorhabditis elegans] ref|NP_503616.1| CYtochrome P450 family member (cyp-33C5) [Caenorhabditis elegans] 3.0E-43
blast T32036 hypothetical protein F41B5.3 - Caenorhabditis elegans 3.0E-43
blast AAB65888 Cytochrome p450 family protein 33C4 [Caenorhabditis elegans] ref|NP_503612.1| CYtochrome P450 family member (cyp-33C4) [Caenorhabditis elegans] 1.0E-41
blast CAE58147 Hypothetical protein CBG01236 [Caenorhabditis briggsae] 5.0E-31
blast AAG24100 Cytochrome p450 family protein 33C7 [Caenorhabditis elegans] ref|NP_503618.1| CYtochrome P450 family member (cyp-33C7) [Caenorhabditis elegans] 5.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 4.3E-7
Pfam IPR001128 EMBL-EBI Cytochrome P450 8.8E-7
Sequence
Target Sequence 
>C. ELEGANS:189306_AT
ggaaacctacattcacttattctagaaaagcccgatatgaaagtttcagaaaatggaaga
aaggttttggagatgtgttcactgtttggatgggtaagtttttctcagctaggtgcacag
cagggaacaactccatatattatgataacatcttacgatttattgaaagaaacttttatt
cgagatggtgacacttataaagacaattatccacagccgttcaatgaaaagtttcgtggt
ggactctatgggctcatcgactccaatggcttactatggagcacacatcgagcaagatta
gctgagtggaagaaaaactttatgggatttttcgacagtcaaatcaaacatcataagcaa
aaatttgactatgattgcgaagaaaatcaagattccgctgaagcctaccttaaagagcag
cgacgacaagaagatcaaggcgagttggagctattttccgacaaacaactctcgaataca
tgtacggatttgtggatcgcaggattatccatcacaaactcaacattgtcctgggcaatt
tgttatcttatgaatcctccgggagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAACCTACATTCACTTATTCTAG 37 529 118 Antisense
AGATGTGTTCACTGTTTGGATGGGT 385 67 188 Antisense
GTAAGTTTTTCTCAGCTAGGTGCAC 105 461 211 Antisense
AGGTGCACAGCAGGGAACAACTCCA 612 57 228 Antisense
ACAATTATCCACAGCCGTTCAATGA 210 115 320 Antisense
AGTTTCGTGGTGGACTCTATGGGCT 504 61 347 Antisense
TCTATGGGCTCATCGACTCCAATGG 401 609 362 Antisense
TCAAGATTCCGCTGAAGCCTACCTT 652 627 504 Antisense
AGCTATTTTCCGACAAACAACTCTC 260 79 566 Antisense
AACTCAACATTGTCCTGGGCAATTT 583 139 634 Antisense
GTTATCTTATGAATCCTCCGGGAGT 639 445 659 Antisense
Sequence Source Affymetrix Proprietary Database