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[189305_at] carrier protein

Description F55G1.5 /REP_DB=WormBase Gene ID /WP=CE07282 /TR=Q20847 /GB=AAB00644.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=carrier protein
Cluster 6grp_total > 95      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 28.7
(-3)
A 		31.2
(-2.8)
A 		87.2
(2.6)
A 		91.8
(3)
A 		63
B 35.4
(-3)
A 		61.7
(1.4)
A 		71.4
(3)
A 		48.3
(-0.9)
A 		36
C 31.6
(-3)
A 		39.2
(-2.2)
A 		75.1
(1.8)
A 		86.1
(3)
A 		55
avr 31.9
(-3) 		44
(-1.4) 		77.9
(3) 		75.4
(2.7) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 46.6
(-2.9)
A 		44
(-3)
A 		87.8
(-1.3)
A 		138.2
(0.7)
P 		195.3
(3)
P 		173.9
(2.2)
P 		151
B 40.7
(-2.5)
A 		28.6
(-3)
A 		80.6
(-1)
A 		131.5
(1)
P 		180.2
(2.8)
P 		184.6
(3)
P 		156
C 21.3
(-3)
A 		84.2
(-1)
A 		45.9
(-2.2)
A 		135.6
(0.7)
P 		159.2
(1.5)
P 		205.9
(3)
P 		185
avr 36.2
(-3) 		52.3
(-2.4) 		71.4
(-1.6) 		135.1
(0.9) 		178.2
(2.6) 		188.1
(3) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 10.4
(-1.7)
A 		6.8
(-3)
A 		22.8
(3)
A 		13.4
(-0.5)
A 		16
B 11.3
(-2)
A 		15.2
(1.7)
A 		16.5
(3)
A 		10.3
(-3)
A 		6
C 10.5
(-3)
A 		11.3
(-2.7)
A 		26.2
(3)
A 		14.5
(-1.5)
A 		16
avr 10.7
(-3) 		11.1
(-2.8) 		21.8
(3) 		12.7
(-1.9) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 8.6
(-3)
A 		15.7
(-2.2)
A 		19.1
(-1.7)
A 		35.1
(0.2)
P 		58.9
(3)
P 		42.3
(1)
P 		50
B 14.2
(-2.6)
A 		9.5
(-3)
A 		19.6
(-2)
A 		34.8
(-0.6)
P 		73.2
(3)
P 		68.8
(2.6)
P 		64
C 7.9
(-3)
A 		25.7
(-1.2)
A 		11.7
(-2.6)
A 		27.3
(-1.1)
P 		51.5
(1.3)
P 		68.9
(3)
P 		61
avr 10.2
(-3) 		17
(-2.2) 		16.8
(-2.2) 		32.4
(-0.4) 		61.2
(3) 		60
(2.9) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189305_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9525
Sequence Type Exemplar sequence
Representative Public ID F55G1.5 NCBI
Target Description F55G1.5 /REP_DB=WormBase Gene ID /WP=CE07282 /TR=Q20847 /GB=AAB00644.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=carrier protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068797(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068797 NCBI Caenorhabditis elegans F55G1.5 (F55G1.5) mRNA, complete cds. 11/11 None
SNAP00000005168 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7475033:7476063:1 11/11 None
GENEFINDER00000005188 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7475033:7476063:1 11/11 None
F55G1.5 ENSEMBL cdna:known chromosome:CEL140:IV:7475033:7476063:1 gene:F55G1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7475038-7476069(+) 100.0 100.0
Public Domain and Genome References
Gene Title carrier protein
Ensembl F55G1.5
Entrez Gene 177518 Entrez gene
SwissProt Q20847 EMBL-EBI
WormBase CE07282 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1623447_A_AT dm
DROSGENOME1:149720_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5743 mitochondrial inner membrane inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5488 binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00644 Hypothetical protein F55G1.5 [Caenorhabditis elegans] ref|NP_501198.1| F55G1.5 [Caenorhabditis elegans] 1.0E-160
blast CAE61889 Hypothetical protein CBG05880 [Caenorhabditis briggsae] 1.0E-148
blast CAE63270 Hypothetical protein CBG07647 [Caenorhabditis briggsae] 2.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.8E-24
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.2E-20
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.3E-28
Sequence
Target Sequence 
>C. ELEGANS:189305_AT
tgtcgacgccacgtgggatgatcgctggagcatcagctggattttgtcaagtcgtaatca
ccacaccaatggagctattgaaaattcgaatgcagcagtcttctgataaagtaaaagcta
ccaagctgatctggaatctgttgacaaaggatggtggtgttcgtgcattgtataaaggcc
ttggaccgacaatggcacgagatgtttcgttttcagcaatgtatttcccgcttttcgcct
atttggatggcctcggtccacgaaagaaagacgattcaggcgacgcagtattctgggcaa
gctttgtatcaggattaactgctggagcaactgcatcattatcagtgactccattggacg
ttgtgaaaacaagaattcaaactggaggatccaactacaacggaattttccacgcgtttt
atcgtattctcgctgatgaaggtgtaaaagctctttttaaaggagcaatttgcagaatga
tggtaatggcaccacttttcggaatcgctcagactgtctactatgttggatcggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCGACGCCACGTGGGATGATCGC 117 557 368 Antisense
TCAAGTCGTAATCACCACACCAATG 659 631 414 Antisense
GGATGGTGGTGTTCGTGCATTGTAT 368 515 516 Antisense
AAGGCCTTGGACCGACAATGGCACG 354 159 542 Antisense
CGAGATGTTTCGTTTTCAGCAATGT 437 249 565 Antisense
TCAGCAATGTATTTCCCGCTTTTCG 56 625 580 Antisense
TTCGCCTATTTGGATGGCCTCGGTC 583 687 601 Antisense
GGCGACGCAGTATTCTGGGCAAGCT 103 541 646 Antisense
TTCCACGCGTTTTATCGTATTCTCG 417 699 775 Antisense
TTTCGGAATCGCTCAGACTGTCTAC 520 671 864 Antisense
GACTGTCTACTATGTTGGATCGGCC 448 375 879 Antisense
Sequence Source Affymetrix Proprietary Database