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[189304_at] cytochrome P450

Description K09D9.2 /REP_DB=WormBase Gene ID /WP=CE21056 /TR=Q9N5I1 /GB=AAF39921.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_total > 21      4grp_total > 0      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 42.4
(-3)
A 		89.1
(3)
A 		46.4
(-2.5)
A 		71.5
(0.7)
A 		47
B 33.4
(2.9)
A 		5.5
(-3)
A 		33.9
(3)
A 		20.1
(0.1)
A 		28
C 35.3
(0.6)
A 		5.9
(-3)
A 		44.5
(1.7)
A 		55.5
(3)
A 		50
avr 37
(-1.6) 		33.5
(-3) 		41.6
(0.1) 		49
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 9.7
(-2.5)
A 		12.8
(-2.3)
A 		86.4
(3)
A 		4.2
(-2.9)
A 		22.8
(-1.6)
A 		2.7
(-3)
A 		84
B 24
(-0.9)
A 		58.7
(3)
A 		46
(1.6)
A 		13.8
(-2.1)
A 		5.6
(-3)
A 		14
(-2.1)
A 		53
C 4.9
(-2.7)
A 		60.1
(3)
A 		11.1
(-2.1)
A 		6.2
(-2.6)
A 		5.9
(-2.6)
A 		2.4
(-3)
A 		58
avr 12.9
(-2.1) 		43.9
(2.4) 		47.8
(3) 		8.1
(-2.8) 		11.4
(-2.3) 		6.4
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 15.4
(0.3)
A 		19.3
(3)
A 		12.1
(-1.9)
A 		10.5
(-3)
A 		9
B 10.7
(3)
A 		1.4
(-3)
A 		7.9
(1.2)
A 		4.3
(-1.1)
A 		9
C 11.7
(1.3)
A 		1.7
(-3)
A 		15.5
(3)
A 		9.4
(0.3)
A 		14
avr 12.6
(3) 		7.5
(-3) 		11.8
(2.1) 		8.1
(-2.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.8
(-2.6)
A 		4.6
(-1.7)
A 		18.8
(3)
A 		1.1
(-2.8)
A 		6.9
(-0.9)
A 		0.6
(-3)
A 		18
B 8.3
(-0.9)
A 		19.5
(3)
A 		11.2
(0.1)
A 		3.7
(-2.5)
A 		2.3
(-3)
A 		5.2
(-2)
A 		17
C 1.8
(-2.7)
A 		18.3
(3)
A 		2.8
(-2.3)
A 		1.2
(-2.9)
A 		1.9
(-2.6)
A 		0.8
(-3)
A 		18
avr 4
(-2) 		14.1
(3) 		10.9
(1.4) 		2
(-3) 		3.7
(-2.2) 		2.2
(-2.9) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189304_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14964
Sequence Type Exemplar sequence
Representative Public ID K09D9.2 NCBI
Target Description K09D9.2 /REP_DB=WormBase Gene ID /WP=CE21056 /TR=Q9N5I1 /GB=AAF39921.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071720(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071720 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-35A3) (cyp-35A3) mRNA, complete cds. 11/11 None
SNAP00000015709 ENSEMBL cdna:SNAP chromosome:CEL140:V:4022462:4024233:1 11/11 None
GENEFINDER00000015717 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4022462:4024233:1 11/11 None
K09D9.2 ENSEMBL cdna:known chromosome:CEL140:V:4022462:4024233:1 gene:K09D9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4022461-4024233(+) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-35A3
Ensembl K09D9.2
Entrez Gene 187209 Entrez gene
SwissProt Q9N5I1 EMBL-EBI
WormBase CE21056 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39921 Cytochrome p450 family protein 35A3 [Caenorhabditis elegans] ref|NP_504121.1| CYtochrome P450 family member (cyp-35A3) [Caenorhabditis elegans] 0.0
blast AAB52315 Cytochrome p450 family protein 35A2 [Caenorhabditis elegans] ref|NP_504880.2| CYtochrome P450 family member (cyp-35A2) [Caenorhabditis elegans] 0.0
blast AAK18902 Hypothetical protein C49G7.8 [Caenorhabditis elegans] ref|NP_504124.1| CYtochrome P450 family member (cyp-35A4) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-143
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 2.9E-90
Sequence
Target Sequence 
>C. ELEGANS:189304_AT
acaactacattgacttctggattcaatcaacttttgctacatccggaagttatggtgaaa
gctagagaggaacttatgaacgtaactgaaaatggttctcgaagtctcagtcttactgac
cgttcatcaactccatacttgaacgcaatgattggagagattcaacgccatgcctcaatt
cttaacttaagtttctggaaagtcaacaaagaattcacatacataggcggtcaccctgtc
gatgctggagctcttgttactgctcaactcagtgctctccatgtcaatgaaacctatttt
acaaatccgcaagttttcgaaccggaaaggtatagtcaagatgagaagcttctacagaaa
ataattccattcggagttggaaagagaagttgcctgggagaatctttggcaaaagcagaa
ttgtatttaatctttggaaacctccttcttcgctataaattcgagccacatggaaaactt
tcggctaccgatttgatgccatacagcgctgggaggagacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACTACATTGACTTCTGGATTCA 334 113 943 Antisense
TTACTGACCGTTCATCAACTCCATA 466 683 1055 Antisense
TGGAGAGATTCAACGCCATGCCTCA 393 549 1095 Antisense
GCCATGCCTCAATTCTTAACTTAAG 129 281 1109 Antisense
TCACATACATAGGCGGTCACCCTGT 198 627 1157 Antisense
GCTCTCCATGTCAATGAAACCTATT 378 299 1216 Antisense
TACAAATCCGCAAGTTTTCGAACCG 87 641 1242 Antisense
TAATCTTTGGAAACCTCCTTCTTCG 463 633 1370 Antisense
GCCACATGGAAAACTTTCGGCTACC 265 279 1407 Antisense
GGCTACCGATTTGATGCCATACAGC 122 539 1425 Antisense
GCCATACAGCGCTGGGAGGAGACCA 421 279 1440 Antisense
Sequence Source Affymetrix Proprietary Database