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[189300_at]

Description T02B5.1 /REP_DB=WormBase Gene ID /WP=CE27775 /TR=O01302 /GB=CAB03272.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=carboxylesterase
Cluster 6grp_high1_10_10 > 72      6grp_total > 73      4grp_total > 56      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 45
(-3)
A 		62.6
(-1.4)
A 		110.9
(3)
P 		56
(-2)
A 		66
B 26.9
(-1.9)
A 		32.3
(-1.5)
A 		99.5
(3)
P 		10
(-3)
A 		90
C 21.5
(-3)
A 		39.3
(-1.9)
A 		119.7
(3)
P 		60.3
(-0.6)
A 		98
avr 31.1
(-3) 		44.7
(-2) 		110
(3) 		42.1
(-2.2) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 93.2
(-0.9)
P 		47.9
(-3)
P 		180.1
(3)
P 		163.4
(2.2)
P 		117.6
(0.2)
P 		104.2
(-0.4)
P 		132
B 93.9
(-0.6)
P 		53.5
(-3)
P 		153.8
(3)
P 		143
(2.4)
P 		139.9
(2.2)
P 		91.1
(-0.8)
P 		100
C 83.1
(0.3)
P 		45.8
(-3)
M 		111.3
(2.9)
P 		112.9
(3)
P 		108.2
(2.6)
P 		74.8
(-0.4)
P 		67
avr 90.1
(-0.5) 		49.1
(-3) 		148.4
(3) 		139.8
(2.5) 		121.9
(1.4) 		90
(-0.5) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 16.4
(-0.6)
A 		13.6
(-1.4)
A 		29
(3)
P 		8.2
(-3)
A 		21
B 8.6
(-1.1)
A 		8
(-1.3)
A 		23.1
(3)
P 		2.1
(-3)
A 		21
C 7.1
(-3)
A 		11.3
(-2.3)
A 		41.7
(3)
P 		10.2
(-2.5)
A 		35
avr 10.7
(-2) 		11
(-2) 		31.3
(3) 		6.8
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 17.2
(-3)
P 		17
(-3)
P 		39.2
(2.5)
P 		41.4
(3)
P 		35.5
(1.5)
P 		25.4
(-0.9)
P 		24
B 32.7
(-0.7)
P 		17.8
(-3)
P 		37.3
(-0)
P 		37.9
(0.1)
P 		56.8
(3)
P 		34
(-0.5)
P 		39
C 30.8
(1.8)
P 		14
(-3)
M 		28.3
(1.1)
P 		22.7
(-0.5)
P 		35
(3)
P 		25
(0.1)
P 		21
avr 26.9
(-0.6) 		16.3
(-3) 		34.9
(1.3) 		34
(1.1) 		42.4
(3) 		28.1
(-0.3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189300_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13650
Sequence Type Exemplar sequence
Representative Public ID T02B5.1 NCBI
Target Description T02B5.1 /REP_DB=WormBase Gene ID /WP=CE27775 /TR=O01302 /GB=CAB03272.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=carboxylesterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074105
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000018961 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14165881:14169274:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074105 8/11 Cross Hyb Matching Probes None
SNAP00000018957 8/11 Cross Hyb Matching Probes None
T02B5.1 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14165880-14169274(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03272 Hypothetical protein T02B5.1 [Caenorhabditis elegans] ref|NP_506506.1| T02B5.1 [Caenorhabditis elegans] 0.0
blast CAB03273 Hypothetical protein T02B5.3 [Caenorhabditis elegans] ref|NP_506504.1| T02B5.3 [Caenorhabditis elegans] 0.0
blast CAB03277 Hypothetical protein ZC376.3 [Caenorhabditis elegans] emb|CAB00887.1| Hypothetical protein ZC376.3 [Caenorhabditis elegans] ref|NP_506508.1| ZC376.3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000018961 1 657-688
Sequence
Target Sequence 
>C. ELEGANS:189300_AT
gagagcattttttgattaactttgataaaaactttataacgcctggaatgagggataatt
attatacggaagcttatgagttttggagcacggtgggcaaaaaatccttcaaagaggaat
ggtctccatcacttgatacatttacatgtgcccttgtaatatctccactagtttctcata
tgaaacaaactacaactgcttttgataaaacttttgagcaaactgaattgttgtacaagg
aggaagttaattttttgaaaagagaaaaattggagagaacgcaagagctaaaaatggaaa
cgaagagacgagataaagctttgcgaattcagaatagaaaaaatggattggcaaataaag
aaattacagaaggagatgaagaagatgagagctcgaaactagttgtttcttatttttttt
ggagaaaaacatttctcaccattcgtttccgtaaaaacaaattttttggattcatacttt
tatcagtttcaattacagatattctcctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGCATTTTTTGATTAACTTTGA 626 391 1520 Antisense
AAAACTTTATAACGCCTGGAATGAG 298 127 1547 Antisense
TTATGAGTTTTGGAGCACGGTGGGC 222 679 1593 Antisense
GCACGGTGGGCAAAAAATCCTTCAA 484 309 1607 Antisense
GTCTCCATCACTTGATACATTTACA 44 471 1641 Antisense
TGATACATTTACATGTGCCCTTGTA 259 565 1653 Antisense
TGCCCTTGTAATATCTCCACTAGTT 315 585 1668 Antisense
TATCTCCACTAGTTTCTCATATGAA 499 659 1679 Antisense
GAAAAACATTTCTCACCATTCGTTT 123 355 1943 Antisense
TTTGGATTCATACTTTTATCAGTTT 317 667 1984 Antisense
GTTTCAATTACAGATATTCTCCTTA 497 449 2005 Antisense
Sequence Source Affymetrix Proprietary Database