[Home] | [Total List]

[189299_at] phospholipase

Description Y65B4BR.1 /REP_DB=WormBase Gene ID /WP=CE25539 /TR=Q9N2Z4 /GB=AAF60857.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=phospholipase
Cluster 6grp_high1_10_10 > 13      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_total > 12      4grp_total > 45      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 423.4
(3)
P 		409.7
(2.5)
P 		326.9
(-0.6)
P 		260.7
(-3)
P 		163
B 384.7
(3)
P 		367.6
(2.2)
P 		312.9
(-0.3)
P 		255.5
(-3)
P 		129
C 427.2
(3)
P 		303.8
(-1.4)
P 		259.6
(-3)
P 		272.6
(-2.5)
P 		168
avr 411.8
(3) 		360.4
(0.9) 		299.8
(-1.5) 		262.9
(-3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 605
1 2 3 4 5 6 range
A 602.6
(1.8)
P 		719.5
(3)
P 		507.3
(0.8)
P 		278.7
(-1.7)
P 		241.1
(-2)
P 		150.8
(-3)
A 		569
B 567.2
(1.2)
P 		748
(3)
P 		516.6
(0.7)
P 		243.6
(-2)
P 		263.3
(-1.8)
P 		142.7
(-3)
P 		605
C 527.8
(1.6)
P 		642.6
(3)
P 		454.9
(0.7)
P 		271.8
(-1.5)
P 		278.4
(-1.5)
P 		152.8
(-3)
P 		490
avr 565.9
(1.5) 		703.4
(3) 		492.9
(0.7) 		264.7
(-1.7) 		260.9
(-1.8) 		148.8
(-3) 		555
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 154.2
(3)
P 		88.9
(-0.4)
P 		85.5
(-0.6)
P 		38.2
(-3)
P 		116
B 122.7
(3)
P 		90.8
(0.2)
P 		72.5
(-1.4)
P 		54.4
(-3)
P 		68
C 141.4
(3)
P 		87.3
(-0.4)
P 		90.5
(-0.2)
P 		46
(-3)
P 		95
avr 139.4
(3) 		89
(-0.2) 		82.8
(-0.6) 		46.2
(-3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 111.1
(-1)
P 		255.9
(3)
P 		110.5
(-1)
P 		70.7
(-2.1)
P 		72.7
(-2)
P 		36.7
(-3)
A 		219
B 197.4
(1.4)
P 		249
(3)
P 		125.4
(-0.8)
P 		64.5
(-2.7)
P 		107
(-1.4)
P 		53.2
(-3)
P 		196
C 195.6
(3)
P 		196.1
(3)
P 		115.8
(-0.3)
P 		54.7
(-2.9)
P 		90.1
(-1.4)
P 		51.2
(-3)
P 		145
avr 168
(0.9) 		233.7
(3) 		117.2
(-0.7) 		63.3
(-2.5) 		89.9
(-1.6) 		47
(-3) 		187
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189299_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2570
Sequence Type Exemplar sequence
Representative Public ID Y65B4BR.1 NCBI
Target Description Y65B4BR.1 /REP_DB=WormBase Gene ID /WP=CE25539 /TR=Q9N2Z4 /GB=AAF60857.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=phospholipase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058352(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058352 NCBI Caenorhabditis elegans Y65B4BR.1 (phospholipase) mRNA, complete cds. 11/11 None
SNAP00000036982 ENSEMBL cdna:SNAP chromosome:CEL140:I:562766:565113:1 11/11 None
GENEFINDER00000036996 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:562766:565113:1 11/11 None
Y65B4BR.1 ENSEMBL cdna:known chromosome:CEL140:I:562766:565113:1 gene:Y65B4BR.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:562765-565113(+) 100.0 100.0
Public Domain and Genome References
Gene Title phospholipase
Ensembl Y65B4BR.1
Entrez Gene 190488 Entrez gene
SwissProt Q9N2Z4 EMBL-EBI
WormBase CE25539 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSGENOME1:152859_AT dm
DROSOPHILA_2:1631157_AT dm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60857 Hypothetical protein Y65B4BR.1 [Caenorhabditis elegans] ref|NP_490753.1| Y65B4BR.1 [Caenorhabditis elegans] 0.0
blast CAE61529 Hypothetical protein CBG05432 [Caenorhabditis briggsae] 0.0
blast AAM44393 Hypothetical protein Y73B6BL.37 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001087 EMBL-EBI Lipolytic enzyme, G-D-S-L 1.5E-13
Sequence
Target Sequence 
>C. ELEGANS:189299_AT
cgacatgtgcgcctattgcaacgaccgagaaaatggcccacactcaaaagcaatctggaa
gcaaaatgtgatcactgccattcaaattttaaaggataacttaccaagaaccatcgtatc
catgaccggaatgttcgacatggccatgcttcgccaaatcgaccacgacaagtatttctg
cgacggcctccatgtgttcgagtgcccatgcgagaagaacaaggacttcccgaataccga
catctcggctgcctgccatctttacatggatgctcagcaggagattcaagactcgggaat
cttcgactcaacagatgactttacatttgtcgttcaaccattcttcaatggaatcacagt
tccaccactcaagcccgacggagaagtcaatctggattggtttgcaccggattgcttcca
tttctcaaaactaggccacgccaatgttgccaagcacttgtggaacaatatcgttcaacc
agtcggatccaagaaccatcaagtcaatctgtcagatcctaccattccactaaactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACATGTGCGCCTATTGCAACGAC 654 251 537 Antisense
TGTTCGACATGGCCATGCTTCGCCA 193 563 668 Antisense
GACCACGACAAGTATTTCTGCGACG 67 385 697 Antisense
ATGTGTTCGAGTGCCCATGCGAGAA 17 51 728 Antisense
TCCCGAATACCGACATCTCGGCTGC 562 595 764 Antisense
GACTCGGGAATCTTCGACTCAACAG 273 375 826 Antisense
ACATTTGTCGTTCAACCATTCTTCA 392 99 859 Antisense
GGATTGGTTTGCACCGGATTGCTTC 75 509 930 Antisense
CTAGGCCACGCCAATGTTGCCAAGC 480 225 967 Antisense
ATATCGTTCAACCAGTCGGATCCAA 340 15 1004 Antisense
CAGATCCTACCATTCCACTAAACTG 483 205 1049 Antisense
Sequence Source Affymetrix Proprietary Database