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[189298_at] protein kinase

Description F22H10.1 /REP_DB=WormBase Gene ID /WP=CE09570 /TR=Q94193 /GB=AAB09099.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_total > 80      4grp_total > 56      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 4.7
(-2.4)
A 		5.4
(-2.2)
A 		21.7
(3)
A 		2.9
(-3)
A 		19
B 2.1
(-3)
A 		2.3
(-1.5)
A 		2.2
(-2.3)
A 		2.9
(3)
A 		1
C 2.6
(-2.8)
A 		5.6
(-1.2)
A 		13.2
(3)
A 		2.3
(-3)
A 		11
avr 3.1
(-2.8) 		4.4
(-1.9) 		12.4
(3) 		2.7
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 8.1
(3)
A 		3.4
(-3)
A 		4.2
(-2)
A 		3.4
(-3)
A 		7.5
(2.2)
A 		4
(-2.2)
A 		5
B 1.4
(-2.8)
A 		1.3
(-2.9)
A 		2.3
(-2.5)
A 		15.2
(3)
A 		1
(-3)
A 		2.3
(-2.5)
A 		14
C 3.2
(-0.9)
A 		4.8
(0.9)
A 		3
(-1.1)
A 		6.8
(3)
A 		1.2
(-3)
A 		2.5
(-1.6)
A 		6
avr 4.2
(-1.6) 		3.2
(-2.7) 		3.2
(-2.7) 		8.5
(3) 		3.2
(-2.7) 		2.9
(-3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.7
(-1.5)
A 		1.2
(-2.1)
A 		5.7
(3)
A 		0.4
(-3)
A 		5
B 0.7
(3)
A 		0.6
(0)
A 		0.5
(-3)
A 		0.6
(0)
A 		0
C 0.9
(-2.3)
A 		1.6
(-1.3)
A 		4.6
(3)
A 		0.4
(-3)
A 		4
avr 1.1
(-1.8) 		1.1
(-1.8) 		3.6
(3) 		0.5
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.5
(-0.4)
A 		1.2
(-1.7)
A 		0.9
(-3)
A 		0.9
(-3)
A 		2.3
(3)
A 		1
(-2.6)
A 		1
B 0.5
(-2.8)
A 		0.4
(-3)
A 		0.6
(-2.7)
A 		4
(3)
A 		0.4
(-3)
A 		0.8
(-2.3)
A 		4
C 1.2
(1.4)
A 		1.5
(3)
A 		0.8
(-0.8)
A 		1.4
(2.5)
A 		0.4
(-3)
A 		0.8
(-0.8)
A 		1
avr 1.1
(-1.6) 		1
(-2.1) 		0.8
(-3) 		2.1
(3) 		1
(-2.1) 		0.9
(-2.5) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189298_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17343
Sequence Type Exemplar sequence
Representative Public ID F22H10.1 NCBI
Target Description F22H10.1 /REP_DB=WormBase Gene ID /WP=CE09570 /TR=Q94193 /GB=AAB09099.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078297(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078297 NCBI Caenorhabditis elegans F22H10.1 (F22H10.1) mRNA, complete cds. 10/11 None
SNAP00000018983 ENSEMBL cdna:SNAP chromosome:CEL140:X:16702634:16703353:1 10/11 None
GENEFINDER00000018987 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16702634:16703353:1 10/11 None
F22H10.1 ENSEMBL cdna:known chromosome:CEL140:X:16702355:16703353:1 gene:F22H10.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16702334-16703353(+) 99.35 99.35
Public Domain and Genome References
Gene Title protein kinase
Ensembl F22H10.1
Entrez Gene 184871 Entrez gene
SwissProt Q94193 EMBL-EBI
WormBase CE35505 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB09099 Hypothetical protein F22H10.1 [Caenorhabditis elegans] ref|NP_510698.2| F22H10.1 [Caenorhabditis elegans] 1.0E-119
blast AAB09099 Hypothetical protein F22H10.1 [Caenorhabditis elegans] ref|NP_510698.2| F22H10.1 [Caenorhabditis elegans] 1.0E-116
blast CAA88975 Hypothetical protein ZC373.3 [Caenorhabditis elegans] ref|NP_509688.1| ZC373.3 [Caenorhabditis elegans] 2.0E-62
blast CAA88975 Hypothetical protein ZC373.3 [Caenorhabditis elegans] ref|NP_509688.1| ZC373.3 [Caenorhabditis elegans] 2.0E-59
blast CAE69889 Hypothetical protein CBG16237 [Caenorhabditis briggsae] 4.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 5.1E-11
Sequence
Target Sequence 
>C. ELEGANS:189298_AT
tgagacaccaggacggctgtcgttcaacaatttgatgcgagtagcgtacactctcggaaa
tacgctgtgttacattcacgatagaggcttcattcatcgagatctgaaagcagacaatgt
tgtcgtgactttttcaaatgaggtgtgtactctgaagctgattgattttggaaaagccat
cagaatcaaggatcaaaatggaaatcaacttccaggacatcaggatggaatagattattc
ccgctgcagccaacacagtgtaaacgttattttgggaattgctccaactcaaaatgacga
ttggtcttccctggtgtatttactgatgaagatgcgtggattttcgtggggtgatactgc
ggaggagatgctggatctcaaagtacaatttgagaatgatccaaaggatatgattgctca
ggacatgatgtggatgcgccagatttatcggaacgccgttaatgaagatatggggaggga
gaacaatcgaggaatcgtcgacaaattggtgcaggctcatgagcattttgacttccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGACACCAGGACGGCTGTCGTTC 159 569 192 Antisense
GATGCGAGTAGCGTACACTCTCGGA 32 415 225 Antisense
AATACGCTGTGTTACATTCACGATA 296 173 250 Antisense
AGGTGTGTACTCTGAAGCTGATTGA 204 59 332 Antisense
GGAATAGATTATTCCCGCTGCAGCC 615 533 418 Antisense
CCGCTGCAGCCAACACAGTGTAAAC 42 263 432 Antisense
ATTGGTCTTCCCTGGTGTATTTACT 554 1 491 Antisense
GATGCGTGGATTTTCGTGGGGTGAT 150 413 522 Antisense
GTGGATGCGCCAGATTTATCGGAAC 571 489 621 Antisense
GTCGACAAATTGGTGCAGGCTCATG 164 475 688 Antisense
GGCTCATGAGCATTTTGACTTCCAG 310 539 705 Antisense
Sequence Source Affymetrix Proprietary Database