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[189296_s_at] carboxylesterase

Description T02B5.3 /REP_DB=WormBase Gene ID /WP=CE13028 /TR=P92016 /GB=CAB03273.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=carboxylesterase
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 93      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 90      6grp_total > 84      4grp_total > 24      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 88.7
(0.4)
P 		55.8
(-3)
P 		92.5
(0.8)
P 		114
(3)
P 		58
B 69.9
(-3)
P 		119.8
(3)
P 		93.6
(-0.2)
P 		101.6
(0.8)
P 		50
C 76.7
(-3)
P 		118.6
(-0.7)
P 		151.5
(1.1)
P 		187.2
(3)
P 		111
avr 78.4
(-3) 		98.1
(-0.9) 		112.5
(0.7) 		134.3
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 72.4
(-3)
P 		72.7
(-3)
P 		74.9
(-2.9)
P 		190.4
(3)
P 		145.9
(0.7)
P 		87.6
(-2.2)
P 		118
B 62.2
(-3)
P 		71.1
(-2.5)
P 		66.9
(-2.7)
P 		173
(3)
P 		168.5
(2.8)
P 		156.9
(2.1)
P 		111
C 53.1
(-3)
P 		89.5
(-1.7)
P 		70.5
(-2.4)
P 		226.1
(3)
P 		139.2
(-0)
P 		175.4
(1.2)
P 		173
avr 62.6
(-3) 		77.8
(-2.3) 		70.8
(-2.6) 		196.5
(3) 		151.2
(1) 		140
(0.5) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 32.3
(3)
P 		12.1
(-3)
P 		24.2
(0.6)
P 		16.7
(-1.6)
P 		20
B 22.3
(-2.5)
P 		29.6
(3)
P 		21.7
(-2.9)
P 		21.6
(-3)
P 		8
C 25.4
(-3)
P 		34.1
(-1.1)
P 		52.8
(3)
P 		31.6
(-1.6)
P 		27
avr 26.7
(-0.9) 		25.3
(-1.8) 		32.9
(3) 		23.3
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 13.3
(-3)
P 		25.8
(-0.9)
P 		16.3
(-2.5)
P 		48.3
(3)
P 		44
(2.3)
P 		21.3
(-1.6)
P 		35
B 21.6
(-2.4)
P 		23.7
(-2.1)
P 		16.3
(-3)
P 		45.8
(0.4)
P 		68.5
(3)
P 		58.5
(1.9)
P 		52
C 19.7
(-2.7)
P 		27.3
(-1.6)
P 		17.9
(-3)
P 		45.5
(1.1)
P 		45
(1)
P 		58.7
(3)
P 		41
avr 18.2
(-2.8) 		25.6
(-1.5) 		16.8
(-3) 		46.5
(2) 		52.5
(3) 		46.2
(1.9) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189296_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13435
Sequence Type Exemplar sequence
Representative Public ID T02B5.3 NCBI
Target Description T02B5.3 /REP_DB=WormBase Gene ID /WP=CE13028 /TR=P92016 /GB=CAB03273.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=carboxylesterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074103(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074103 NCBI Caenorhabditis elegans T02B5.3 (carboxylesterase) mRNA, complete cds. 11/11 None
SNAP00000018954 ENSEMBL cdna:SNAP chromosome:CEL140:V:14160392:14162333:-1 11/11 None
GENEFINDER00000018963 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14160373:14165366:-1 11/11 None
T02B5.3 ENSEMBL cdna:known chromosome:CEL140:V:14160263:14163414:-1 gene:T02B5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14160372-14163388(-) 100.0 100.0
Public Domain and Genome References
Gene Title carboxylesterase
Ensembl T02B5.3
Entrez Gene 179914 Entrez gene
SwissProt P92016 EMBL-EBI
WormBase CE13028 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03273 Hypothetical protein T02B5.3 [Caenorhabditis elegans] ref|NP_506504.1| T02B5.3 [Caenorhabditis elegans] 0.0
blast CAB03272 Hypothetical protein T02B5.1 [Caenorhabditis elegans] ref|NP_506506.1| T02B5.1 [Caenorhabditis elegans] 0.0
blast CAE61007 Hypothetical protein CBG04745 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 3.2E-68
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506504.1 1 620-642
T02B5.3 1 620-642
SNAP00000018954 1 438-460
GENEFINDER00000018963 7 67-89,102-124,129-151,158-180,203-225,238-260,874-896
Sequence
Target Sequence 
>C. ELEGANS:189296_S_AT
tttgaagatccatctccttcgacagatcaaccttggctacagtatacaaaagaaaataaa
gagtatttcttggttgattttgatcagaatctgacaatgcctggaatgaagaaaaactat
tatgctaaagcttatgaattttggagtaccgctggtcaaaagtcattcaaagaagaatgg
tctccatcacttgacacatttatcattacaaatttagttgctccaataatcactcacatg
gatcaaataacatttgacgtcgataaaactgtcgagcaaatggaaatactaaaaattgaa
cgggagaattttttgaagagcgaaaaattgaaaaggaaatcggaattggagatgagtaga
tggattaaaaagggaagaaaacgagtaataaataaaaggatgggatttatgccagtggaa
atcatagaaaatgaagaaagtgaaagtgatggaggatttagcatcggcttacttttattt
ggtggaacacttctaggtggaattgtctatgtttcatcttatcaattcttccgacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGAAGATCCATCTCCTTCGACAG 1 663 1417 Antisense
TCCTTCGACAGATCAACCTTGGCTA 704 589 1431 Antisense
GATCAACCTTGGCTACAGTATACAA 92 379 1441 Antisense
GAGTATTTCTTGGTTGATTTTGATC 388 399 1477 Antisense
AAGCTTATGAATTTTGGAGTACCGC 256 149 1544 Antisense
GAGTACCGCTGGTCAAAAGTCATTC 492 397 1560 Antisense
AGTTGCTCCAATAATCACTCACATG 373 65 1632 Antisense
GCATCGGCTTACTTTTATTTGGTGG 543 307 1877 Antisense
GGAACACTTCTAGGTGGAATTGTCT 301 527 1900 Antisense
GGAATTGTCTATGTTTCATCTTATC 683 533 1915 Antisense
TTCATCTTATCAATTCTTCCGACGA 614 687 1929 Antisense
Sequence Source Affymetrix Proprietary Database