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[189295_at] 7TM chemoreceptor, sri family

Description T10D4.12 /REP_DB=WormBase Gene ID /WP=CE25987 /GEN=sri-32 /GB=AAK71402.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 02      4grp_total > 14      6grp_cgc > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 44
(0.5)
A 		29.6
(-3)
A 		54.5
(3)
A 		43.7
(0.4)
A 		25
B 31.3
(1.9)
A 		37.1
(3)
A 		5.6
(-3)
A 		11.5
(-1.9)
A 		32
C 54.5
(0.1)
A 		21
(-2.9)
A 		20.1
(-3)
A 		87
(3)
P 		67
avr 43.3
(1.8) 		29.2
(-2.3) 		26.7
(-3) 		47.4
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 48.9
(2.6)
P 		52
(3)
A 		36.1
(1.1)
A 		14.7
(-1.5)
A 		27.3
(0)
A 		2.4
(-3)
A 		50
B 33.3
(3)
A 		23.8
(-0.1)
A 		15.2
(-3)
A 		29.1
(1.6)
A 		28
(1.2)
A 		27.9
(1.2)
A 		18
C 43.9
(0.6)
A 		67.5
(3)
A 		7.6
(-3)
A 		29.8
(-0.8)
A 		22.8
(-1.5)
A 		8
(-3)
A 		60
avr 42
(2) 		47.8
(3) 		19.6
(-1.8) 		24.5
(-1) 		26
(-0.7) 		12.8
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 16
(3)
A 		6.4
(-3)
A 		14.3
(1.9)
A 		6.4
(-3)
A 		10
B 10
(3)
A 		9.2
(2.4)
A 		1.3
(-3)
A 		2.4
(-2.2)
A 		9
C 18
(3)
A 		6
(-3)
A 		7
(-2.5)
A 		14.7
(1.4)
P 		12
avr 14.7
(3) 		7.2
(-3) 		7.5
(-2.8) 		7.8
(-2.5) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 9
(-0.2)
P 		18.5
(3)
A 		7.9
(-0.6)
A 		3.7
(-2)
A 		8.2
(-0.5)
A 		0.6
(-3)
A 		18
B 11.6
(3)
A 		7.9
(0.2)
A 		3.7
(-3)
A 		7.7
(0)
A 		11.4
(2.8)
A 		10.4
(2.1)
A 		8
C 16.3
(1.6)
A 		20.6
(3)
A 		1.9
(-3)
A 		6
(-1.7)
A 		7.4
(-1.2)
A 		2.7
(-2.7)
A 		19
avr 12.3
(1.2) 		15.7
(3) 		4.5
(-3) 		5.8
(-2.3) 		9
(-0.6) 		4.6
(-2.9) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189295_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5706
Sequence Type Exemplar sequence
Representative Public ID T10D4.12 NCBI
Target Description T10D4.12 /REP_DB=WormBase Gene ID /WP=CE25987 /GEN=sri-32 /GB=AAK71402.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062060(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062060 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-32) (sri-32) mRNA, complete cds. 11/11 None
T10D4.12 ENSEMBL cdna:known chromosome:CEL140:II:3153045:3154478:-1 gene:T10D4.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3153043-3154477(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-32
Ensembl T10D4.12
Entrez Gene 191907 Entrez gene
SwissProt Q965H2 EMBL-EBI
WormBase CE25987 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK71402 Serpentine receptor, class i protein 32 [Caenorhabditis elegans] ref|NP_494461.1| Serpentine Receptor, class I family member (sri-32) [Caenorhabditis elegans] 0.0
blast NP_494463 Serpentine Receptor, class I family member (sri-34) [Caenorhabditis elegans] gb|AAK72091.1| Serpentine receptor, class i protein 34 [Caenorhabditis elegans] 4.0E-86
blast NP_494462 Serpentine Receptor, class I family member (sri-33) [Caenorhabditis elegans] gb|AAK72090.1| Serpentine receptor, class i protein 33 [Caenorhabditis elegans] 3.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.0E-46
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494461.1 7 13-35,47-69,89-111,132-154,189-211,241-263,273-295
T10D4.12 7 13-35,47-69,89-111,132-154,189-211,241-263,273-295
Sequence
Target Sequence 
>C. ELEGANS:189295_AT
acaacaatctttatcccttatcatcaacaaacatgtgatccccgaaagtcttctgtacac
cggagctggagccttcatctacatacccttatcagtttttcttacattccgccaaatcac
tatgagccaagaggatcagatggcctatatcgctacgaatcatccagaataccacaggaa
cttcgaggagcttcagaattttgcaatttttcatttcaactcatggtgctattatctggt
ggtagttactatttcaggaggacttttttgcggaggcgctgcgattttcacaacggctga
tatgtttcggatgatgaaggacctacagactagggtgtccaggtcgagcctgaagcggta
cagagctacgattcaaagccttattgctcagttggtcgtttccatgatgctagtcgtacc
tttaacgacttttgtggccctgatcttcaataaatctgaatatgcgcaagcaatcgccca
attctgcctagcaatctgtgcacttcattcaatagtcaacgctggcgttctgatcctatc
cacctctcagtacaggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACAATCTTTATCCCTTATCATC 146 113 357 Antisense
TGATCCCCGAAAGTCTTCTGTACAC 423 565 392 Antisense
CTTCATCTACATACCCTTATCAGTT 515 221 429 Antisense
TTATCAGTTTTTCTTACATTCCGCC 476 677 445 Antisense
GGATCAGATGGCCTATATCGCTACG 579 511 489 Antisense
CGCTGCGATTTTCACAACGGCTGAT 396 255 633 Antisense
CAGACTAGGGTGTCCAGGTCGAGCC 72 205 682 Antisense
CTTATTGCTCAGTTGGTCGTTTCCA 184 223 736 Antisense
ATGCGCAAGCAATCGCCCAATTCTG 662 41 818 Antisense
TCTGCCTAGCAATCTGTGCACTTCA 698 607 839 Antisense
TCCTATCCACCTCTCAGTACAGGAA 665 589 890 Antisense
Sequence Source Affymetrix Proprietary Database