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[189294_at] cytochrome P450

Description F41B5.7 /REP_DB=WormBase Gene ID /WP=CE10228 /TR=O16672 /GB=AAG24104.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_total > 34      4grp_total > 11      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 1.9
(-3)
A 		2.4
(-1.6)
A 		2.3
(-1.9)
A 		4
(3)
A 		2
B 1.6
(-3)
A 		5.3
(-2.3)
A 		2.8
(-2.8)
A 		32.6
(3)
A 		31
C 8.8
(3)
A 		3
(-1.6)
A 		1.2
(-3)
A 		4.7
(-0.2)
A 		8
avr 4.1
(-2) 		3.6
(-2.2) 		2.1
(-3) 		13.8
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 6.1
(2.8)
A 		3.1
(-1)
A 		1.9
(-2.5)
A 		1.5
(-3)
A 		1.9
(-2.5)
A 		6.3
(3)
A 		5
B 7.4
(2)
A 		3.4
(-1.2)
A 		8.6
(3)
A 		3.3
(-1.2)
A 		1.5
(-2.7)
A 		1.1
(-3)
A 		8
C 3.6
(-0.3)
A 		6.6
(3)
A 		2.7
(-1.3)
A 		3.2
(-0.8)
A 		3.2
(-0.8)
A 		1.2
(-3)
A 		5
avr 5.7
(3) 		4.4
(0.8) 		4.4
(0.8) 		2.7
(-2.1) 		2.2
(-3) 		2.9
(-1.8) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.7
(3)
A 		0.5
(-3)
A 		0.6
(0)
A 		0.6
(0)
A 		0
B 0.5
(-3)
A 		1.3
(-2.3)
A 		0.7
(-2.8)
A 		6.9
(3)
A 		6
C 2.9
(3)
A 		0.9
(-1.8)
A 		0.4
(-3)
A 		0.8
(-2)
A 		3
avr 1.4
(-0.8) 		0.9
(-2.2) 		0.6
(-3) 		2.8
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.1
(0.8)
A 		1.1
(0.8)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.6
(-1.9)
A 		1.5
(3)
A 		1
B 2.6
(3)
A 		1.1
(-1.1)
A 		2.1
(1.6)
A 		0.9
(-1.6)
A 		0.6
(-2.5)
A 		0.4
(-3)
A 		2
C 1.3
(0.4)
A 		2
(3)
A 		0.7
(-1.9)
A 		0.6
(-2.3)
A 		1
(-0.8)
A 		0.4
(-3)
A 		2
avr 1.7
(3) 		1.4
(1.4) 		1.1
(-0.3) 		0.6
(-3) 		0.7
(-2.5) 		0.8
(-1.9) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189294_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15916
Sequence Type Exemplar sequence
Representative Public ID F41B5.7 NCBI
Target Description F41B5.7 /REP_DB=WormBase Gene ID /WP=CE10228 /TR=O16672 /GB=AAG24104.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071216(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071216 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-33C6) (cyp-33C6) mRNA, complete cds. 11/11 None
SNAP00000036002 ENSEMBL cdna:SNAP chromosome:CEL140:V:2247300:2252953:-1 11/11 None
GENEFINDER00000036014 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2247300:2249163:-1 11/11 None
F41B5.7 ENSEMBL cdna:known chromosome:CEL140:V:2247441:2249163:-1 gene:F41B5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2247440-2249163(-) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-33C6
Ensembl F41B5.7
Entrez Gene 185591 Entrez gene
SwissProt O16672 EMBL-EBI
WormBase CE10228 Wormbase
Functional Annotations
Ortholog
ID Title Organism
MOE430A:1418653_AT cytochrome P450, family 2. subfamily c, polypeptide 37 mm
MOUSE430A_2:1418653_AT cytochrome P450, family 2. subfamily c, polypeptide 37 mm
MOUSE430_2:1418653_AT cytochrome P450, family 2. subfamily c, polypeptide 37 mm
MOE430A:1419094_AT cytochrome P450, family 2. subfamily c, polypeptide 37 mm
MOUSE430A_2:1419094_AT cytochrome P450, family 2. subfamily c, polypeptide 37 mm
MOUSE430_2:1419094_AT cytochrome P450, family 2. subfamily c, polypeptide 37 mm
MOE430A:1418653_AT cytochrome P450, family 2, subfamily c, polypeptide 50 mm
MOUSE430A_2:1418653_AT cytochrome P450, family 2, subfamily c, polypeptide 50 mm
MOUSE430_2:1418653_AT cytochrome P450, family 2, subfamily c, polypeptide 50 mm
MOE430A:1455457_AT cytochrome P450, family 2, subfamily c, polypeptide 50 mm
MOUSE430A_2:1455457_AT cytochrome P450, family 2, subfamily c, polypeptide 50 mm
MOUSE430_2:1455457_AT cytochrome P450, family 2, subfamily c, polypeptide 50 mm
MOE430A:1419094_AT cytochrome P450, family 2, subfamily c, polypeptide 50 mm
MOUSE430A_2:1419094_AT cytochrome P450, family 2, subfamily c, polypeptide 50 mm
MOUSE430_2:1419094_AT cytochrome P450, family 2, subfamily c, polypeptide 50 mm
MOE430A:1418653_AT cytochrome P450 mm
MOUSE430A_2:1418653_AT cytochrome P450 mm
MOUSE430_2:1418653_AT cytochrome P450 mm
MOE430A:1455457_AT cytochrome P450 mm
MOUSE430A_2:1455457_AT cytochrome P450 mm
MOUSE430_2:1455457_AT cytochrome P450 mm
MG-U74AV2:99083_AT cytochrome P450 mm
MOE430A:1419094_AT cytochrome P450 mm
MOUSE430A_2:1419094_AT cytochrome P450 mm
MOUSE430_2:1419094_AT cytochrome P450 mm
MG-U74CV2:132101_AT Cytochrome P450, family 2, subfamily c, polypeptide 50 (Cyp2c50), mRNA mm
RT-U34:J03786_S_AT cytochrome P450, family 2, subfamily c, polypeptide 40 rn
RG-U34A:J03786_S_AT cytochrome P450, family 2, subfamily c, polypeptide 40 rn
RT-U34:M33550CDS_S_AT cytochrome P450, family 2, subfamily c, polypeptide 40 rn
RG-U34A:M33550CDS_S_AT cytochrome P450, family 2, subfamily c, polypeptide 40 rn
RAE230A:1368155_AT cytochrome P450, family 2, subfamily c, polypeptide 40 rn
RAT230_2:1368155_AT cytochrome P450, family 2, subfamily c, polypeptide 40 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24104 Cytochrome p450 family protein 33C6 [Caenorhabditis elegans] ref|NP_503617.1| CYtochrome P450 family member (cyp-33C6) [Caenorhabditis elegans] 0.0
blast T32036 hypothetical protein F41B5.3 - Caenorhabditis elegans 0.0
blast AAG24101 Cytochrome p450 family protein 33C5 [Caenorhabditis elegans] ref|NP_503616.1| CYtochrome P450 family member (cyp-33C5) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-157
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-162
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-163
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 2.2E-99
Pfam IPR001128 EMBL-EBI Cytochrome P450 8.3E-100
Pfam IPR001128 EMBL-EBI Cytochrome P450 8.3E-100
Sequence
Target Sequence 
>C. ELEGANS:189294_AT
gatgtcgactccgaggagagccaagattacgcagaagcctatttgaaagagcagagaaaa
catgaagctcgaggagaattcgagctattctccaatactcaattcgcaaatacttgcttg
gacctttggctggcaggagtttccacaactaacactacagttaactggacaatatgctat
gtcttgaatcatccagaagttcttcaaaagatgaatgaagagttcgaccaggtggttgga
agtgataggctggtgtcaatgggtgataagaataatcttccttactttaatgctgtgctc
aatgagtctcaaagatgtgccaatattgtaacaatcaatttgttccatgcaactacaaag
gacaccgtaattaatggatatccaattaaaaagggaactggagtcatcgcccagattagt
acggttatgctcgatgaaaagatcttcccagaaccatacaaattcaaccctgacagattc
ataggcgagaatggaaagcctattaagatcgagcagctcatcccattctctattggaaag
cgacaatgcccgggagaagggcttgctcggatggagattttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTCGACTCCGAGGAGAGCCAAG 409 407 781 Antisense
GCTATTCTCCAATACTCAATTCGCA 74 305 864 Antisense
TATGCTATGTCTTGAATCATCCAGA 181 657 953 Antisense
TCTTCCTTACTTTAATGCTGTGCTC 103 619 1056 Antisense
GTACGGTTATGCTCGATGAAAAGAT 309 457 1199 Antisense
AAGATCTTCCCAGAACCATACAAAT 81 153 1219 Antisense
AGAACCATACAAATTCAACCCTGAC 505 73 1230 Antisense
CAACCCTGACAGATTCATAGGCGAG 531 187 1245 Antisense
GGAAAGCCTATTAAGATCGAGCAGC 468 527 1273 Antisense
GCTCATCCCATTCTCTATTGGAAAG 427 301 1296 Antisense
GGGCTTGCTCGGATGGAGATTTTCC 530 493 1339 Antisense
Sequence Source Affymetrix Proprietary Database