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[189291_at]

Description C24G6.2A /REP_DB=WormBase Gene ID /WP=CE17457 /TR=O76385 /GB=AAC19210.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 0      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 74      6grp_total > 03      4grp_total > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 311
1 2 3 4 range
A 689
(3)
P 		395.6
(-2.7)
P 		585.5
(1)
P 		377.8
(-3)
P 		311
B 604.7
(2.2)
P 		627.5
(3)
P 		463
(-2.6)
P 		450.9
(-3)
P 		177
C 646.6
(3)
P 		587.6
(-0)
P 		554
(-1.7)
P 		529.2
(-3)
P 		117
avr 646.8
(3) 		536.9
(-0.4) 		534.2
(-0.5) 		452.6
(-3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 452
1 2 3 4 5 6 range
A 665.4
(2.4)
P 		679.5
(3)
P 		599.7
(-0.6)
P 		546.2
(-3)
P 		593.9
(-0.9)
P 		556
(-2.6)
P 		133
B 845.3
(3)
P 		716.2
(-0.5)
P 		761.3
(0.7)
P 		737
(0.1)
P 		639
(-2.5)
P 		621.9
(-3)
P 		223
C 685.6
(0.2)
P 		624.3
(-0.6)
P 		531.2
(-1.8)
P 		893.2
(3)
P 		550.5
(-1.6)
P 		441.6
(-3)
P 		452
avr 732.1
(3) 		673.3
(1.2) 		630.7
(-0.2) 		725.5
(2.8) 		594.5
(-1.3) 		539.8
(-3) 		192
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 250.9
(3)
P 		85.9
(-2.1)
P 		153.1
(-0)
P 		55.3
(-3)
P 		196
B 192.8
(3)
P 		155
(0.7)
P 		107.3
(-2.3)
P 		96.1
(-3)
P 		97
C 214.1
(3)
P 		168.9
(0.8)
P 		193.1
(2)
P 		89.2
(-3)
P 		125
avr 219.3
(3) 		136.6
(-0.6) 		151.2
(0.1) 		80.2
(-3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 122.7
(-3)
P 		241.6
(3)
P 		130.6
(-2.6)
P 		138.5
(-2.2)
P 		179.2
(-0.1)
P 		135.4
(-2.4)
P 		119
B 294.1
(3)
P 		238.4
(-0.1)
P 		184.9
(-3)
P 		195.2
(-2.4)
P 		259.6
(1.1)
P 		231.9
(-0.4)
P 		109
C 254.1
(3)
P 		190.5
(-0.2)
P 		135.2
(-3)
P 		179.6
(-0.8)
P 		178.1
(-0.8)
P 		147.8
(-2.4)
P 		119
avr 223.6
(3) 		223.5
(3) 		150.2
(-3) 		171.1
(-1.3) 		205.6
(1.5) 		171.7
(-1.2) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189291_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12451
Sequence Type Exemplar sequence
Representative Public ID C24G6.2A NCBI
Target Description C24G6.2A /REP_DB=WormBase Gene ID /WP=CE17457 /TR=O76385 /GB=AAC19210.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072057(11), NM_072058(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072057 NCBI Caenorhabditis elegans C24G6.2a (C24G6.2) mRNA, complete cds. 11/11 None
NM_072058 NCBI Caenorhabditis elegans C24G6.2b (C24G6.2) mRNA, complete cds. 11/11 None
SNAP00000033922 ENSEMBL cdna:SNAP chromosome:CEL140:V:5526349:5533127:1 11/11 None
GENEFINDER00000033930 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5526349:5533127:1 11/11 None
C24G6.2a ENSEMBL cdna:known chromosome:CEL140:V:5526322:5533320:1 gene:C24G6.2 11/11 None
C24G6.2b ENSEMBL cdna:known chromosome:CEL140:V:5530796:5533127:1 gene:C24G6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5526348-5533127(+) 100.0 100.0
Public Domain and Genome References
Ensembl C24G6.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19210 Hypothetical protein C24G6.2a [Caenorhabditis elegans] ref|NP_504458.1| C24G6.2a [Caenorhabditis elegans] 0.0
blast CAE64619 Hypothetical protein CBG09377 [Caenorhabditis briggsae] 0.0
blast AAC19211 Hypothetical protein C24G6.2b [Caenorhabditis elegans] ref|NP_504459.1| C24G6.2b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 3.8E-5
Pfam IPR000719 EMBL-EBI Protein kinase 6.4E-74
Pfam IPR000719 EMBL-EBI Protein kinase 6.4E-74
Pfam IPR000719 EMBL-EBI Protein kinase 6.4E-74
Pfam IPR000719 EMBL-EBI Protein kinase 6.4E-74
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504458.1 1 475-497
NP_504459.1 1 2-24
C24G6.2a 1 475-497
C24G6.2b 1 2-24
SNAP00000033922 1 589-611
GENEFINDER00000033930 1 613-635
Sequence
Target Sequence 
>C. ELEGANS:189291_AT
agggttcgtccatcgtgatgtggctgcgagaaacgttcttgttcacgaaggaactgcatg
taaaattggagattttgggctttgccgttatatttatgctgatcagtcccagtacaagag
caagggaggaaaactaccactcaaatggatgtcaccagaagcaattcgacactacgagtt
ttcgattaaaagtgacatctggtcatttggaatccttctatttgaagttatcactctcgg
tggctctccgtatcctggaatgcctccagaggatgttcttccattcttggagggtggtgg
tagaattgaaaaaccagacaattgtcccgaaaacttctacgatgtaatgatgcaatgttg
gaatgcggatccagatgataggatagagttttcggatgttcgaatgcagctcgcgacaca
gttggaagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGGTTCGTCCATCGTGATGTGGCT 250 57 2124 Antisense
GGCTGCGAGAAACGTTCTTGTTCAC 50 541 2145 Antisense
ATTGGAGATTTTGGGCTTTGCCGTT 417 3 2188 Antisense
TATGCTGATCAGTCCCAGTACAAGA 566 655 2218 Antisense
GGTCATTTGGAATCCTTCTATTTGA 670 503 2324 Antisense
TGAAGTTATCACTCTCGGTGGCTCT 26 575 2346 Antisense
TCTCCGTATCCTGGAATGCCTCCAG 541 609 2368 Antisense
GCCTCCAGAGGATGTTCTTCCATTC 707 281 2385 Antisense
GACAATTGTCCCGAAAACTTCTACG 143 365 2440 Antisense
CGGATGTTCGAATGCAGCTCGCGAC 697 243 2516 Antisense
GCAGCTCGCGACACAGTTGGAAGAT 355 311 2529 Antisense
Sequence Source Affymetrix Proprietary Database