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[189288_at] phospholipase A2

Description C07E3.9 /REP_DB=WormBase Gene ID /WP=CE02124 /TR=Q17790 /GB=CAA90098.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=phospholipase A2
Cluster 6grp_high1_10_10 > 35      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_total > 01      4grp_total > 02      6grp_high1_sub > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 796
1 2 3 4 range
A 208.5
(-2.5)
P 		229.6
(-2.2)
P 		164.7
(-3)
P 		645.6
(3)
P 		481
B 227.4
(-2.8)
P 		205.9
(-3)
P 		214.9
(-2.9)
P 		793.3
(3)
P 		587
C 263.9
(-2.5)
P 		265.4
(-2.4)
P 		193.7
(-3)
P 		961
(3)
P 		767
avr 233.3
(-2.6) 		233.6
(-2.6) 		191.1
(-3) 		800
(3) 		609

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 151.5
(0.8)
P 		175.3
(3)
P 		173.7
(2.8)
P 		112
(-2.9)
A 		170.3
(2.5)
P 		111.4
(-3)
A 		64
B 192
(0.7)
P 		237.2
(3)
P 		150.6
(-1.4)
A 		119.7
(-3)
P 		173.8
(-0.2)
P 		214.3
(1.8)
P 		118
C 196.6
(1)
P 		249
(3)
P 		91
(-3)
A 		157.6
(-0.5)
P 		146.4
(-0.9)
P 		133.7
(-1.4)
P 		158
avr 180
(0.3) 		220.5
(3) 		138.4
(-2.4) 		129.8
(-3) 		163.5
(-0.8) 		153.1
(-1.5) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 75.9
(0.8)
P 		49.8
(-2.2)
P 		43
(-3)
P 		94.5
(3)
P 		52
B 72.5
(-1.9)
P 		50.8
(-2.9)
P 		49.8
(-3)
P 		169.1
(3)
P 		119
C 87.3
(-1.7)
P 		76.3
(-2.4)
P 		67.5
(-3)
P 		162
(3)
P 		95
avr 78.6
(-1.3) 		59
(-2.6) 		53.4
(-3) 		141.9
(3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 27.9
(-2.9)
P 		62.4
(3)
P 		37.8
(-1.2)
P 		28.4
(-2.8)
A 		51.4
(1.1)
P 		27.1
(-3)
A 		35
B 66.8
(1.4)
P 		79
(2.9)
P 		36.6
(-2.4)
A 		31.7
(-3)
P 		70.6
(1.8)
P 		79.9
(3)
P 		48
C 72.9
(2.6)
P 		76
(3)
P 		23.2
(-3)
A 		31.7
(-2)
P 		47.4
(-0.3)
P 		44.8
(-0.5)
P 		53
avr 55.9
(0.6) 		72.5
(3) 		32.5
(-2.7) 		30.6
(-3) 		56.5
(0.7) 		50.6
(-0.1) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189288_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3118
Sequence Type Exemplar sequence
Representative Public ID C07E3.9 NCBI
Target Description C07E3.9 /REP_DB=WormBase Gene ID /WP=CE02124 /TR=Q17790 /GB=CAA90098.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=phospholipase A2
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063827(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063827 NCBI Caenorhabditis elegans C07E3.9 (C07E3.9) mRNA, complete cds. 11/11 None
SNAP00000023198 ENSEMBL cdna:SNAP chromosome:CEL140:II:10350672:10351393:1 11/11 None
GENEFINDER00000023206 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10350672:10351393:1 11/11 None
C07E3.9 ENSEMBL cdna:known chromosome:CEL140:II:10350672:10351393:1 gene:C07E3.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10350668-10351390(+) 100.0 100.0
Public Domain and Genome References
Gene Title phospholipase A2
Ensembl C07E3.9
Entrez Gene 182374 Entrez gene
SwissProt Q17790 EMBL-EBI
WormBase CE02124 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1582360_AT phospholipase A2, group IB (pancreas) cfa
CANINE_2:CFAAFFX.16043.1.S1_S_AT phospholipase A2, group IB (pancreas) cfa
CHICKEN:GGA.6214.1.S1_A_AT phospholipase A2, group IB (pancreas) gga
CHICKEN:GGA.6214.1.S2_AT Phospholipase A2, group IB (pancreas) gga
HG-U95AV2:912_S_AT phospholipase A2, group IB (pancreas) hs
HC-G110:912_S_AT phospholipase A2, group IB (pancreas) hs
HG-U133_PLUS_2:206311_S_AT phospholipase A2, group IB (pancreas) hs
HG-U133A:206311_S_AT phospholipase A2, group IB (pancreas) hs
HG-FOCUS:206311_S_AT phospholipase A2, group IB (pancreas) hs
HG-U133A_2:206311_S_AT phospholipase A2, group IB (pancreas) hs
HU35KSUBA:M21054_S_AT phospholipase A2, group IB (pancreas) hs
HUGENEFL:M21056_AT phospholipase A2, group IB (pancreas) hs
U133_X3P:G4505846_3P_S_AT phospholipase A2, group IB (pancreas) hs
U133_X3P:G4505846_3P_AT phospholipase A2, group IB (pancreas) hs
MG-U74AV2:160120_I_AT phospholipase A2, group IB, pancreas mm
MU11KSUBB:MSA.5910.0_S_AT phospholipase A2, group IB, pancreas mm
MG-U74BV2:162522_F_AT phospholipase A2, group IB, pancreas mm
MG-U74CV2:168078_F_AT phospholipase A2, group IB, pancreas mm
MG-U74CV2:165917_R_AT phospholipase A2, group IB, pancreas mm
MOE430A:1433949_X_AT phospholipase A2, group IB, pancreas mm
MOUSE430A_2:1433949_X_AT phospholipase A2, group IB, pancreas mm
MOUSE430_2:1433949_X_AT phospholipase A2, group IB, pancreas mm
MOE430A:1437015_X_AT phospholipase A2, group IB, pancreas mm
MOUSE430A_2:1437015_X_AT phospholipase A2, group IB, pancreas mm
MOUSE430_2:1437015_X_AT phospholipase A2, group IB, pancreas mm
MOE430A:1416626_AT phospholipase A2, group IB, pancreas mm
MOUSE430A_2:1416626_AT phospholipase A2, group IB, pancreas mm
MOUSE430_2:1416626_AT phospholipase A2, group IB, pancreas mm
MOE430A:1433948_AT Soluble PLA2-Ib precursor (Pla2g1b) mm
MOUSE430A_2:1433948_AT Soluble PLA2-Ib precursor (Pla2g1b) mm
MOUSE430_2:1433948_AT Soluble PLA2-Ib precursor (Pla2g1b) mm
MG-U74CV2:169367_R_AT Soluble PLA2-Ib precursor (Pla2g1b) mm
RT-U34:D00036_AT phospholipase A2, group IB rn
RG-U34A:D00036_AT phospholipase A2, group IB rn
RAE230A:1370257_AT phospholipase A2, group IB rn
RAT230_2:1370257_AT phospholipase A2, group IB rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4623 phospholipase A2 activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90098 Hypothetical protein C07E3.9 [Caenorhabditis elegans] ref|NP_496228.1| C07E3.9 [Caenorhabditis elegans] 7.0E-87
blast CAE59379 Hypothetical protein CBG02732 [Caenorhabditis briggsae] 1.0E-70
blast CAG02506 unnamed protein product [Tetraodon nigroviridis] 2.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR001211 EMBL-EBI Phospholipase A2 1.1E-21
Sequence
Target Sequence 
>C. ELEGANS:189288_AT
gaacttcatacttctagtgtttctagccgctctttcaacgacttgctattgcaccaatcc
gagactgaaggctctctggaacctggaggaggtcgctgaatgcgaacttcactacaatgc
attgcactacaataattatggatgctggtgtggaatcggtggatctcatgagcctgtcga
tggaatcgatgagtgttgtatgcaccatgacaagtgctatgatgctgctgtcgataataa
ggtttgtatggatgtcgaaatcgaatacgttgatgattattcctggtcatgcatgaattc
cactgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTTCATACTTCTAGTGTTTCTA 44 351 15 Antisense
CGCTCTTTCAACGACTTGCTATTGC 389 253 42 Antisense
CTATTGCACCAATCCGAGACTGAAG 702 221 60 Antisense
CTGAAGGCTCTCTGGAACCTGGAGG 658 237 79 Antisense
GTCGCTGAATGCGAACTTCACTACA 522 473 106 Antisense
GGATGCTGGTGTGGAATCGGTGGAT 365 513 154 Antisense
TCGGTGGATCTCATGAGCCTGTCGA 184 607 170 Antisense
GATGAGTGTTGTATGCACCATGACA 520 411 202 Antisense
AGTGCTATGATGCTGCTGTCGATAA 472 53 227 Antisense
ATACGTTGATGATTATTCCTGGTCA 383 23 279 Antisense
CCTGGTCATGCATGAATTCCACTGC 155 265 296 Antisense
Sequence Source Affymetrix Proprietary Database