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[189285_at] protein kinase

Description K02E10.7 /REP_DB=WormBase Gene ID /WP=CE04699 /TR=Q21138 /GB=AAC47073.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_total > 05      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 68.6
(0.3)
P 		53.8
(-1.9)
A 		46.4
(-3)
A 		87.1
(3)
P 		41
B 78.9
(2.3)
P 		55.4
(-3)
A 		71.7
(0.7)
M 		81.8
(3)
P 		26
C 96.6
(3)
P 		70
(-3)
A 		87.9
(1)
M 		78.4
(-1.1)
P 		27
avr 81.4
(2.7) 		59.7
(-3) 		68.7
(-0.6) 		82.4
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 77.7
(3)
A 		33.9
(-0.7)
A 		49
(0.6)
P 		15.1
(-2.3)
A 		55.9
(1.1)
A 		7.1
(-3)
A 		71
B 67.8
(3)
P 		48.6
(0.2)
A 		35.8
(-1.7)
A 		27.2
(-3)
A 		47
(-0.1)
A 		46.5
(-0.1)
A 		41
C 57.1
(1.1)
M 		79.7
(3)
A 		34.2
(-0.7)
A 		47.7
(0.4)
A 		23.6
(-1.6)
A 		6.7
(-3)
A 		73
avr 67.5
(3) 		54.1
(1.3) 		39.7
(-0.5) 		30
(-1.7) 		42.2
(-0.2) 		20.1
(-3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 25
(3)
P 		11.7
(-3)
A 		12.1
(-2.8)
A 		12.7
(-2.5)
P 		13
B 25.1
(3)
P 		13.7
(-3)
A 		16.6
(-1.5)
M 		17.4
(-1.1)
P 		11
C 32
(3)
P 		20.1
(-0.8)
A 		30.7
(2.6)
M 		13.2
(-3)
P 		19
avr 27.4
(3) 		15.2
(-2.6) 		19.8
(-0.5) 		14.4
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 14.3
(2)
A 		12
(1.1)
A 		10.7
(0.6)
P 		3.8
(-2.2)
A 		16.9
(3)
A 		1.7
(-3)
A 		15
B 23.6
(3)
P 		16.2
(0.3)
A 		8.7
(-2.5)
A 		7.2
(-3)
A 		19.1
(1.4)
A 		17.3
(0.7)
A 		16
C 21.2
(2.2)
M 		24.3
(3)
A 		8.7
(-1.2)
A 		9.6
(-1)
A 		7.6
(-1.5)
A 		2.2
(-3)
A 		22
avr 19.7
(3) 		17.5
(2) 		9.4
(-1.8) 		6.9
(-3) 		14.5
(0.6) 		7.1
(-2.9) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189285_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18532
Sequence Type Exemplar sequence
Representative Public ID K02E10.7 NCBI
Target Description K02E10.7 /REP_DB=WormBase Gene ID /WP=CE04699 /TR=Q21138 /GB=AAC47073.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076055(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076055 NCBI Caenorhabditis elegans K02E10.7 (K02E10.7) mRNA, complete cds. 11/11 None
SNAP00000017101 ENSEMBL cdna:SNAP chromosome:CEL140:X:2501354:2505150:-1 11/11 None
GENEFINDER00000017103 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2501354:2505150:-1 11/11 None
K02E10.7 ENSEMBL cdna:known chromosome:CEL140:X:2500996:2508542:-1 gene:K02E10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2501353-2505686(-) 92.12 100.0
Public Domain and Genome References
Gene Title protein kinase
Ensembl K02E10.7
Entrez Gene 186892 Entrez gene
SwissProt Q21138 EMBL-EBI
WormBase CE31194 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC47073 Hypothetical protein K02E10.7 [Caenorhabditis elegans] ref|NP_508456.2| K02E10.7 [Caenorhabditis elegans] 0.0
blast CAE58866 Hypothetical protein CBG02096 [Caenorhabditis briggsae] 1.0E-93
blast CAE58866 Hypothetical protein CBG02096 [Caenorhabditis briggsae] 2.0E-58
blast NP_010765 AMP-activated serine/threonine protein kinase found in a complex containing Snf4p and members of the Sip1p/Sip2p/Gal83p family; required for transcription of glucose-repressed genes, thermotolerance, sporulation, and peroxisome biogenesis; Snf1p [Saccharomyces cerevisiae] gb|AAB64904.1| Snf1p: serine/threonine protein kinase; CAI: 0.19 [Saccharomyces cerevisiae] sp|P06782|SNF1_YEAST Carbon catabolite derepressing protein kinase gb|AAA35058.1| SNF1 protein kinase 4.0E-23
Protein Families
Method ID Description E-Value
hanks 2.2.2 CaMK Group; CaMK II KIN1/SNF1/Nim1; KIN2 1.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.0E-11
Pfam IPR000719 EMBL-EBI Protein kinase 5.5E-6
Pfam IPR000719 EMBL-EBI Protein kinase 3.2E-13
Sequence
Target Sequence 
>C. ELEGANS:189285_AT
gcatgtgcttgagaatcgtcattccagcaaaagatgaaattgcctcttcgtcaattttca
atcgcataataaaaagccgtttgggtcagacgatcaagcgcttccgatcacatcaagata
ctgtagttgattcggattttggagattacgcacttatgaacttccgcagagaaaacaccg
agattgaagttgctcgaaacatgccaaagttcacgaacaaacagcaagttcagctctact
attgcaaaaaggaagccgaacgtgtctgggaaaatctggcgataaaaatttgcatgcgat
gtcgaagagctggaactgatgctttgaatcacgacgaggataagtgtctttataagctga
ttgcagaagctgtggagagtgaagaagtgatttattatggcgcagaggatcaattcaatc
tccgtttcttctctcttgtctacagaaatgacggtggacgtgcatccgcaatgactcgct
tccgtagaggttcaataagagttctaacctctggataccggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATGTGCTTGAGAATCGTCATTCC 348 311 1616 Antisense
TGCCTCTTCGTCAATTTTCAATCGC 317 585 1656 Antisense
TTGGGTCAGACGATCAAGCGCTTCC 628 705 1696 Antisense
AGCGCTTCCGATCACATCAAGATAC 638 81 1712 Antisense
GATTACGCACTTATGAACTTCCGCA 154 431 1759 Antisense
GAAGCCGAACGTGTCTGGGAAAATC 33 343 1867 Antisense
GATCAATTCAATCTCCGTTTCTTCT 694 421 2023 Antisense
GTTTCTTCTCTCTTGTCTACAGAAA 225 451 2039 Antisense
ATGACGGTGGACGTGCATCCGCAAT 451 45 2063 Antisense
GCAATGACTCGCTTCCGTAGAGGTT 65 321 2083 Antisense
GAGTTCTAACCTCTGGATACCGGAG 498 395 2114 Antisense
Sequence Source Affymetrix Proprietary Database