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[189282_at] cytochrome P450

Description C06B3.3 /REP_DB=WormBase Gene ID /WP=CE27662 /TR=O02651 /GB=CAB03393.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 71      6grp_total > 54      4grp_total > 24      6grp_cgc > 92      6grp_cgc_sub > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 417
1 2 3 4 range
A 218.5
(-3)
P 		308.4
(-1.3)
P 		301.3
(-1.4)
P 		527.8
(3)
P 		309
B 198.2
(-3)
P 		338.7
(0.3)
P 		449.7
(2.9)
P 		453.3
(3)
P 		255
C 183.2
(-3)
P 		340.3
(-0.7)
P 		418.8
(0.4)
P 		600.6
(3)
P 		417
avr 200
(-3) 		329.1
(-0.6) 		389.9
(0.5) 		527.2
(3) 		327

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 448
1 2 3 4 5 6 range
A 152.7
(-2.9)
P 		429.5
(1.9)
P 		490.8
(3)
P 		311.4
(-0.1)
P 		148
(-3)
P 		404.1
(1.5)
P 		343
B 187.9
(-2.9)
P 		244.2
(-2)
P 		586.4
(3)
P 		245.3
(-2)
P 		178.4
(-3)
P 		295.6
(-1.3)
P 		408
C 267
(-2.6)
P 		243.2
(-3)
P 		596
(3)
P 		299
(-2.1)
P 		262.3
(-2.7)
P 		306.4
(-1.9)
P 		353
avr 202.5
(-2.9) 		305.6
(-1.2) 		557.7
(3) 		285.2
(-1.5) 		196.2
(-3) 		335.4
(-0.7) 		362
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 79.6
(3)
P 		66.9
(-3)
P 		78.8
(2.6)
P 		77.3
(1.9)
P 		13
B 63.2
(-3)
P 		83.7
(0)
P 		104.2
(3)
P 		96.6
(1.9)
P 		41
C 60.7
(-3)
P 		97.8
(-0.4)
P 		146
(3)
P 		101.3
(-0.1)
P 		85
avr 67.8
(-3) 		82.8
(-0.9) 		109.7
(3) 		91.7
(0.4) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 28.1
(-3)
P 		152.8
(3)
P 		106.9
(0.8)
P 		79
(-0.6)
P 		44.7
(-2.2)
P 		98.4
(0.4)
P 		125
B 65.4
(-3)
P 		81.3
(-1.7)
P 		142.4
(3)
P 		65
(-3)
P 		72.5
(-2.4)
P 		110.2
(0.5)
P 		77
C 99
(-0.5)
P 		74.2
(-2.1)
P 		151.7
(3)
P 		60.1
(-3)
P 		84.9
(-1.4)
P 		102.6
(-0.2)
P 		92
avr 64.2
(-3) 		102.8
(0.3) 		133.7
(3) 		68
(-2.7) 		67.4
(-2.7) 		103.7
(0.4) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189282_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13021
Sequence Type Exemplar sequence
Representative Public ID C06B3.3 NCBI
Target Description C06B3.3 /REP_DB=WormBase Gene ID /WP=CE27662 /TR=O02651 /GB=CAB03393.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171550(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171550 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-35C1) (cyp-35C1) mRNA, complete cds. 11/11 A 
C06B3.3 ENSEMBL cdna:known chromosome:CEL140:V:13899284:13901077:-1 gene:C06B3.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13899303-13901065(-) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-35C1
Ensembl C06B3.3
Entrez Gene 179885 Entrez gene
SwissProt O02651 EMBL-EBI
WormBase CE27662 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03393 Hypothetical protein C06B3.3 [Caenorhabditis elegans] emb|CAB01123.2| Hypothetical protein C06B3.3 [Caenorhabditis elegans] ref|NP_741638.1| CYtochrome P450 family member (cyp-35C1) [Caenorhabditis elegans] 0.0
blast CAE66205 Hypothetical protein CBG11445 [Caenorhabditis briggsae] 0.0
blast CAE58283 Hypothetical protein CBG01390 [Caenorhabditis briggsae] 1.0E-160
Protein Families
Method ID Description E-Value
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-137
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 4.2E-86
Sequence
Target Sequence 
>C. ELEGANS:189282_AT
actgatctatggataaccggccaagaaacaacgacaacaactctggtgtctgcattcatc
caatttttgaacaatccccaagtcatggatacagttcagaaagagctcatcaaagtgact
aacggaggatctcgccaattatctttgagagacaaaactgaaactccttatttaaatgca
acaattgcggaagtacaacgacatgcatccatcctcaatatcaatttttggcggatcaat
aatgagccaacagtaattggaggacatcctgtcgactcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGATCTATGGATAACCGGCCAAG 252 95 910 Antisense
GAAACAACGACAACAACTCTGGTGT 233 355 934 Antisense
AACTCTGGTGTCTGCATTCATCCAA 518 141 948 Antisense
AATTTTTGAACAATCCCCAAGTCAT 640 173 971 Antisense
CCCAAGTCATGGATACAGTTCAGAA 66 259 986 Antisense
AAAGTGACTAACGGAGGATCTCGCC 702 119 1021 Antisense
GGAGGATCTCGCCAATTATCTTTGA 151 517 1033 Antisense
GAAACTCCTTATTTAAATGCAACAA 21 357 1069 Antisense
GAAGTACAACGACATGCATCCATCC 250 337 1099 Antisense
ATGCATCCATCCTCAATATCAATTT 623 43 1112 Antisense
ATTGGAGGACATCCTGTCGACTCAG 363 3 1165 Antisense
Sequence Source Affymetrix Proprietary Database