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[189275_at] C-type lectin

Description C07A9.1 /REP_DB=WormBase Gene ID /WP=CE00502 /TR=SW:P34312 /GB=CAA82340.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=C-type lectin
Cluster 6grp_total > 61      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 26.6
(-1)
A 		54.2
(3)
A 		12.5
(-3)
A 		41.2
(1.1)
A 		42
B 32.4
(-0.2)
A 		14.5
(-3)
A 		39
(0.9)
A 		52.3
(3)
A 		38
C 33.9
(-1.9)
A 		16.8
(-3)
A 		16.4
(-3)
A 		115.5
(3)
P 		99
avr 31
(-1.9) 		28.5
(-2.2) 		22.6
(-3) 		69.7
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 69.6
(2.7)
A 		26.4
(-1.3)
A 		27.6
(-1.2)
A 		73.1
(3)
A 		68.7
(2.6)
A 		7.4
(-3)
A 		66
B 15
(-2.3)
A 		18.2
(-1.9)
A 		55.5
(3)
A 		41.9
(1.2)
A 		10
(-3)
A 		26.6
(-0.8)
A 		46
C 25.5
(-1.5)
A 		53.3
(2)
A 		60.9
(3)
A 		36
(-0.1)
A 		13.3
(-3)
A 		43
(0.7)
A 		48
avr 36.7
(-0.3) 		32.6
(-1.3) 		48
(2.4) 		50.3
(3) 		30.7
(-1.8) 		25.7
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 9.7
(1.5)
A 		11.8
(3)
A 		3.3
(-3)
A 		6
(-1.1)
A 		9
B 10.3
(2.4)
A 		3.6
(-3)
A 		9
(1.3)
A 		11.1
(3)
A 		8
C 11.2
(-0.4)
A 		4.8
(-3)
A 		5.7
(-2.6)
A 		19.5
(3)
P 		15
avr 10.4
(1.3) 		6.7
(-2.3) 		6
(-3) 		12.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 12.8
(0.5)
A 		9.4
(-0.6)
A 		6
(-1.7)
A 		18.5
(2.3)
A 		20.7
(3)
A 		1.8
(-3)
A 		19
B 5.2
(-2.2)
A 		6
(-1.7)
A 		13.5
(3)
A 		11.1
(1.5)
A 		4
(-3)
A 		9.9
(0.7)
A 		10
C 9.4
(-0.5)
A 		16.3
(3)
A 		15.5
(2.6)
A 		7.2
(-1.6)
A 		4.3
(-3)
A 		14.4
(2.1)
A 		12
avr 9.1
(-2.3) 		10.6
(0.2) 		11.7
(2) 		12.3
(3) 		9.7
(-1.3) 		8.7
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189275_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7175
Sequence Type Exemplar sequence
Representative Public ID C07A9.1 NCBI
Target Description C07A9.1 /REP_DB=WormBase Gene ID /WP=CE00502 /TR=SW:P34312 /GB=CAA82340.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=C-type lectin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066747(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066747 NCBI Caenorhabditis elegans C07A9.1 (C07A9.1) mRNA, complete cds. 11/11 None
SNAP00000039334 ENSEMBL cdna:SNAP chromosome:CEL140:III:9723227:9724454:-1 11/11 None
GENEFINDER00000039336 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9723227:9725110:-1 11/11 None
C07A9.1 ENSEMBL cdna:known chromosome:CEL140:III:9723227:9725110:-1 gene:C07A9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9723600-9727431(-) 93.52 100.0
Public Domain and Genome References
Gene Title C-type lectin
Ensembl C07A9.1
Entrez Gene 182353 Entrez gene
SwissProt P34312 EMBL-EBI
WormBase CE37745 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA82340 Hypothetical protein C07A9.1 [Caenorhabditis elegans] ref|NP_499148.2| C07A9.1 [Caenorhabditis elegans] sp|P34312|YKT1_CAEEL Hypothetical C-type lectin protein C07A9.1 precursor 1.0E-169
blast CAA82340 Hypothetical protein C07A9.1 [Caenorhabditis elegans] ref|NP_499148.2| C07A9.1 [Caenorhabditis elegans] sp|P34312|YKT1_CAEEL Hypothetical C-type lectin protein C07A9.1 precursor 1.0E-136
blast CAE65147 Hypothetical protein CBG10013 [Caenorhabditis briggsae] 1.0E-125
blast CAE65147 Hypothetical protein CBG10013 [Caenorhabditis briggsae] 1.0E-101
Sequence
Target Sequence 
>C. ELEGANS:189275_AT
ggagctgtatccatgtcttcattggctggcctttggtacacaaagcttgatgcaatgttt
ttaccgttcgtatgcgagtttccaccttcaacggtttatgataatggaatattgtatcgt
tccccaaaaactcaaagtctaattttcccatcagctggaacaaaagcagcacttctcatg
gttgatgcagttgatcaatctcgcctctactcaaaaaatgaaattggaccattgaaaact
gaagcagaaaccggagaaaaagtttatttaaaaccaattaatatcagtacaaacggattt
ccggaattcagtgggcctccaatagttatactgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCTGTATCCATGTCTTCATTGG 677 521 958 Antisense
GTCTTCATTGGCTGGCCTTTGGTAC 55 469 972 Antisense
GATGCAATGTTTTTACCGTTCGTAT 287 413 1006 Antisense
TACCGTTCGTATGCGAGTTTCCACC 62 649 1019 Antisense
GAGTTTCCACCTTCAACGGTTTATG 450 399 1033 Antisense
CAAAGTCTAATTTTCCCATCAGCTG 185 193 1090 Antisense
AAAGCAGCACTTCTCATGGTTGATG 433 123 1120 Antisense
TGATGCAGTTGATCAATCTCGCCTC 608 565 1140 Antisense
CAATCTCGCCTCTACTCAAAAAATG 477 181 1153 Antisense
GATTTCCGGAATTCAGTGGGCCTCC 213 421 1253 Antisense
GTGGGCCTCCAATAGTTATACTGAA 133 489 1268 Antisense
Sequence Source Affymetrix Proprietary Database