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[189273_at] EF hand domains

Description F55A11.1 /REP_DB=WormBase Gene ID /WP=CE05943 /TR=Q20796 /GB=CAA96655.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=EF hand domains
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 60      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 56      6grp_total > 61      4grp_total > 50      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1274
1 2 3 4 range
A 1335.4
(-2.7)
P 		2406.8
(3)
P 		2029.6
(1)
P 		1279.5
(-3)
P 		1127
B 1374.9
(-2.4)
P 		2240.2
(3)
P 		2019.4
(1.6)
P 		1286.5
(-3)
P 		954
C 1350.4
(-1.9)
P 		2363.5
(3)
P 		2148.7
(2)
P 		1133.1
(-3)
P 		1230
avr 1353.6
(-2.3) 		2336.8
(3) 		2065.9
(1.5) 		1233
(-3) 		1104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 788
1 2 3 4 5 6 range
A 2187.4
(2.6)
P 		1628.7
(-2.6)
P 		2074.3
(1.5)
P 		2233.5
(3)
P 		1847.2
(-0.6)
P 		1580.9
(-3)
P 		653
B 1916.7
(0.4)
P 		1468.5
(-3)
P 		2256.6
(3)
P 		2018.5
(1.2)
P 		2133
(2.1)
P 		1618
(-1.9)
P 		788
C 1804.3
(-1.3)
P 		1644.3
(-3)
P 		2110.3
(2)
P 		2199.3
(3)
P 		1834.7
(-0.9)
P 		1702.4
(-2.4)
P 		555
avr 1969.5
(1.1) 		1580.5
(-3) 		2147.1
(3) 		2150.4
(3) 		1938.3
(0.8) 		1633.8
(-2.4) 		570
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 562
1 2 3 4 range
A 486.2
(2.2)
P 		522.5
(2.9)
P 		530.6
(3)
P 		187.3
(-3)
P 		343
B 438.4
(0.5)
P 		553.3
(3)
P 		467.9
(1.2)
P 		274.2
(-3)
P 		279
C 447
(-0.2)
P 		679.5
(2.3)
P 		748.9
(3)
P 		191.1
(-3)
P 		558
avr 457.2
(0.9) 		585.1
(3) 		582.5
(3) 		217.5
(-3) 		368

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 482
1 2 3 4 5 6 range
A 403.2
(-2.4)
P 		579.2
(3)
P 		451.7
(-0.9)
P 		566.5
(2.6)
P 		557.4
(2.3)
P 		384.9
(-3)
P 		194
B 666.9
(-0.2)
P 		488.8
(-3)
P 		548
(-2.1)
P 		534.6
(-2.3)
P 		866.6
(3)
P 		603.3
(-1.2)
P 		378
C 668.8
(3)
P 		501.7
(-1.4)
P 		537.1
(-0.5)
P 		442.3
(-3)
P 		593.7
(1)
P 		569.9
(0.4)
P 		227
avr 579.6
(-0.5) 		523.2
(-2.6) 		512.3
(-3) 		514.5
(-2.9) 		672.6
(3) 		519.4
(-2.7) 		160
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189273_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14724
Sequence Type Exemplar sequence
Representative Public ID F55A11.1 NCBI
Target Description F55A11.1 /REP_DB=WormBase Gene ID /WP=CE05943 /TR=Q20796 /GB=CAA96655.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=EF hand domains
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073566(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073566 NCBI Caenorhabditis elegans F55A11.1 (F55A11.1) mRNA, complete cds. 11/11 None
SNAP00000030953 ENSEMBL cdna:SNAP chromosome:CEL140:V:11766119:11766967:-1 11/11 None
GENEFINDER00000030968 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11766119:11766967:-1 11/11 None
F55A11.1 ENSEMBL cdna:known chromosome:CEL140:V:11765825:11766967:-1 gene:F55A11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067048 1/11 Cross Hyb Matching Probes None
Y47D3A.17b.1 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11766118-11766967(-) 100.0 100.0
Public Domain and Genome References
Gene Title EF hand domains
Ensembl F55A11.1
Entrez Gene 179610 Entrez gene
SwissProt Q20796 EMBL-EBI
WormBase CE05943 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1629791_AT dm
DROSGENOME1:142611_AT dm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA96655 Hypothetical protein F55A11.1 [Caenorhabditis elegans] ref|NP_505967.1| F55A11.1 [Caenorhabditis elegans] 1.0E-68
blast CAE75303 Hypothetical protein CBG23273 [Caenorhabditis briggsae] 3.0E-62
blast NP_789778 multiple coagulation factor deficiency 2 [Mus musculus] ref|NP_647456.1| multiple coagulation factor deficiency 2 [Mus musculus] dbj|BAE24757.1| unnamed protein product [Mus musculus] dbj|BAE30702.1| unnamed protein product [Mus musculus] gb|AAM28464.1| neural stem cell derived neuronal survival protein precursor [Mus musculus] dbj|BAC36914.1| unnamed protein product [Mus musculus] dbj|BAC36638.1| unnamed protein product [Mus musculus] dbj|BAC35955.1| unnamed protein product [Mus musculus] dbj|BAC28169.1| unnamed protein product [Mus musculus] sp|Q8K5B2|MCFD2_MOUSE Multiple coagulation factor deficiency protein 2 homolog precursor (Neural stem cell derived neuronal survival protein) 4.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.011
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.52
Sequence
Target Sequence 
>C. ELEGANS:189273_AT
attttggtggtatcttgcctcattcttggttcctttgcccaccaaccacagcagtttcct
ggttctaatcaacagcaaccacaacagggtggccaagcggaacaagctcaacatgctcag
cctgggcaacagcagtttggtggagaacaggccagagatgaacaccacataaaagaacat
ttggacggaaaagtggacccaactgctaacatgacgccagaacaacttcaattccattat
ttcaatatgcacgatttagataaaaatgggaaactggatggagtcgagttgattaaggca
ataacgcatttccatgccgagaatccaggaccacagcatacacaaaataatgccaatgcc
aatcatcagccaccaccactcccaagtgaagttgaattggagacgatgattgatagtatt
ttaaaggacgacgatttcaatgctgatggcttcatcgactacggagagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTGGTGGTATCTTGCCTCATTC 646 11 25 Antisense
CAGCAGTTTCCTGGTTCTAATCAAC 601 203 73 Antisense
GAACAAGCTCAACATGCTCAGCCTG 167 353 124 Antisense
GCTCAGCCTGGGCAACAGCAGTTTG 193 299 139 Antisense
TGGACCCAACTGCTAACATGACGCC 316 547 218 Antisense
ATGACGCCAGAACAACTTCAATTCC 628 43 235 Antisense
CGCATTTCCATGCCGAGAATCCAGG 637 253 329 Antisense
TCCAGGACCACAGCATACACAAAAT 482 589 348 Antisense
TAATGCCAATGCCAATCATCAGCCA 217 637 372 Antisense
CCACCACCACTCCCAAGTGAAGTTG 635 273 394 Antisense
GATGGCTTCATCGACTACGGAGAGT 271 407 469 Antisense
Sequence Source Affymetrix Proprietary Database