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[189270_at] ankyrin repeats

Description F28H7.10 /REP_DB=WormBase Gene ID /WP=CE09771 /TR=P90784 /GB=CAA98449.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=ankyrin repeats
Cluster 6grp_high1_10_10 > 26      4grp_high_8_8 > 17      6grp_total > 15      4grp_total > 31      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 149.3
(3)
P 		91.6
(-2.2)
P 		82.6
(-3)
P 		99.1
(-1.5)
P 		67
B 125.7
(3)
P 		62.9
(-1.9)
P 		48.1
(-3)
P 		97.1
(0.8)
P 		78
C 133.6
(3)
P 		51.6
(-3)
A 		75.9
(-1.2)
P 		123.3
(2.2)
P 		82
avr 136.2
(3) 		68.7
(-3) 		68.9
(-3) 		106.5
(0.4) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 97.4
(3)
P 		75.2
(1.2)
P 		78.7
(1.5)
P 		54.8
(-0.5)
P 		38.4
(-1.8)
P 		24.1
(-3)
M 		73
B 113.8
(2.7)
P 		118.2
(3)
P 		50.6
(-2.2)
P 		50.9
(-2.2)
P 		40.8
(-3)
P 		76.9
(-0.2)
P 		77
C 91.9
(3)
P 		82.8
(1.9)
P 		43.4
(-2.6)
P 		80.5
(1.7)
P 		50.6
(-1.8)
A 		40
(-3)
P 		52
avr 101
(3) 		92.1
(2.1) 		57.6
(-1.5) 		62.1
(-1) 		43.3
(-3) 		47
(-2.6) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 54.4
(3)
P 		19.9
(-2.2)
P 		21.6
(-1.9)
P 		14.5
(-3)
P 		40
B 40.1
(3)
P 		15.5
(-2.1)
P 		11.1
(-3)
P 		20.7
(-1)
P 		29
C 44.2
(3)
P 		14.8
(-3)
A 		26.5
(-0.6)
P 		20.8
(-1.8)
P 		29
avr 46.2
(3) 		16.7
(-3) 		19.7
(-2.4) 		18.7
(-2.6) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 18
(0.5)
P 		26.7
(3)
P 		17.1
(0.2)
P 		13.9
(-0.7)
P 		11.6
(-1.4)
P 		5.9
(-3)
M 		21
B 39.6
(3)
P 		39.4
(3)
P 		12.3
(-3)
P 		13.5
(-2.7)
P 		16.6
(-2.1)
P 		28.7
(0.6)
P 		27
C 34
(3)
P 		25.3
(0.7)
P 		11
(-3)
P 		16.2
(-1.6)
P 		16.4
(-1.6)
A 		13.4
(-2.4)
P 		23
avr 30.5
(3) 		30.5
(3) 		13.5
(-3) 		14.5
(-2.6) 		14.9
(-2.5) 		16
(-2.1) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189270_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13745
Sequence Type Exemplar sequence
Representative Public ID F28H7.10 NCBI
Target Description F28H7.10 /REP_DB=WormBase Gene ID /WP=CE09771 /TR=P90784 /GB=CAA98449.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=ankyrin repeats
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073347(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073347 NCBI Caenorhabditis elegans Osm-9 and Capsaicin receptor-Related family member (ocr-1) (ocr-1) mRNA, complete cds. 11/11 None
F28H7.10 ENSEMBL cdna:known chromosome:CEL140:V:10766951:10771040:1 gene:F28H7.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017211 3/11 Cross Hyb Matching Probes None
GENEFINDER00000038702 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10766950-10771040(+) 100.0 100.0
Public Domain and Genome References
Gene Title ankyrin repeats
Gene Symbol ocr-1
Ensembl F28H7.10
Entrez Gene 185101 Entrez gene
SwissProt P90784 EMBL-EBI
WormBase CE09771 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6811 ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5216 ion channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98449 Hypothetical protein F28H7.10 [Caenorhabditis elegans] emb|CAA96644.1| Hypothetical protein F28H7.10 [Caenorhabditis elegans] ref|NP_505748.1| Osm-9 and Capsaicin receptor-Related family member (ocr-1) [Caenorhabditis elegans] 0.0
blast CAE64885 Hypothetical protein CBG09697 [Caenorhabditis briggsae] 0.0
blast AAC04431 Osm-9 and capsaicin receptor-related protein 2 [Caenorhabditis elegans] ref|NP_501380.1| Osm-9 and Capsaicin receptor-Related family member (ocr-2) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005821 EMBL-EBI Ion transport protein 4.0E-13
Pfam IPR002110 EMBL-EBI Ankyrin 9.4E-7
Pfam IPR002110 EMBL-EBI Ankyrin 1.0E-5
Pfam IPR002110 EMBL-EBI Ankyrin 1.3E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505748.1 7 377-399,448-470,483-505,515-534,539-561,566-588,648-670
F28H7.10 7 377-399,448-470,483-505,515-534,539-561,566-588,648-670
Sequence
Target Sequence 
>C. ELEGANS:189270_AT
acttgatttttacttcttgtgaacgtgactctactgcaatcaagaaaattgatcctatgg
gttcggagttcaataatattatggaaaaccctgttgatgctcttcttcgtacatttatca
tgacaattggagagttttctgttctttatcgtgaaatgtcagcttgtgataatttctgga
tgaaatggatcgggaaacttatattcgtaatctttgagacatttgtatcaattctccaat
tcaatttgcttattgccatgatgactagaacttatgaaacaatatttttgacacgaaagg
agtggaaaaggcaatgggctcaagtcattctaatgttggaaatgggattatcacctgcaa
gtcggaagatgcatttacttagatatacaagaccaactggtatcaataaaagagttagaa
gttatgttgtggtatctaaaggagaagtagtttttgataattactgcggaagcaagtcat
atttcttatctgattcaaacttttacaactttcaggaacacgaagtgaaggcaaaggcac
tggcaatgatgagtgccaaactccacattgaggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTGATTTTTACTTCTTGTGAACG 650 103 1757 Antisense
GTGAACGTGACTCTACTGCAATCAA 523 481 1775 Antisense
GATCCTATGGGTTCGGAGTTCAATA 349 415 1807 Antisense
TGGAAAACCCTGTTGATGCTCTTCT 110 547 1838 Antisense
TGCTCTTCTTCGTACATTTATCATG 37 581 1854 Antisense
GAGAGTTTTCTGTTCTTTATCGTGA 628 395 1886 Antisense
AATTCTCCAATTCAATTTGCTTATT 622 175 1986 Antisense
AAGGCAATGGGCTCAAGTCATTCTA 314 161 2064 Antisense
ATGGGATTATCACCTGCAAGTCGGA 117 51 2098 Antisense
GCAAGTCATATTTCTTATCTGATTC 338 321 2228 Antisense
GAGTGCCAAACTCCACATTGAGGTC 694 399 2307 Antisense
Sequence Source Affymetrix Proprietary Database