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[189269_at]

Description C55B6.1 /REP_DB=WormBase Gene ID /WP=CE09007 /TR=P91190 /GB=AAB42302.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glycerol kinase
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_high_8_8 > 57      6grp_highest_nonorm > 91      6grp_total > 95      4grp_total > 61      6grp_highest_sub > In      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 144.7
(1)
P 		101.5
(-1.6)
P 		178.7
(3)
P 		76.9
(-3)
M 		102
B 184.3
(3)
P 		131.4
(-0.3)
P 		179
(2.7)
P 		88.1
(-3)
P 		96
C 178.4
(3)
P 		153
(1.5)
M 		162.5
(2.1)
P 		73.7
(-3)
P 		105
avr 169.1
(2.7) 		128.6
(0.1) 		173.4
(3) 		79.6
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 160.5
(-2.9)
P 		158.2
(-3)
P 		197.9
(-1.4)
P 		205.7
(-1.1)
P 		307.8
(3)
P 		226.9
(-0.2)
P 		150
B 200.5
(-2)
P 		173.6
(-2.9)
P 		171.4
(-3)
P 		235.5
(-0.9)
P 		318
(1.8)
P 		352.8
(3)
P 		181
C 144
(-1.8)
P 		184.4
(-0.6)
P 		103.2
(-3)
P 		232.2
(0.8)
P 		269.4
(1.9)
P 		308.5
(3)
P 		205
avr 168.3
(-2.5) 		172.1
(-2.4) 		157.5
(-3) 		224.5
(-0.1) 		298.4
(3) 		296.1
(2.9) 		141
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 52.7
(3)
P 		22
(-1.4)
P 		46.7
(2.1)
P 		11.3
(-3)
M 		41
B 58.8
(3)
P 		32.5
(-0.9)
P 		41.5
(0.4)
P 		18.8
(-3)
P 		40
C 59.1
(3)
P 		44
(1.1)
M 		56.6
(2.7)
P 		12.4
(-3)
P 		47
avr 56.9
(3) 		32.8
(-0.4) 		48.3
(1.8) 		14.2
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 29.6
(-3)
P 		56.3
(-0.5)
P 		43.1
(-1.7)
P 		52.2
(-0.9)
P 		92.9
(3)
P 		55.2
(-0.6)
P 		63
B 69.8
(-1.1)
P 		57.8
(-1.9)
P 		41.6
(-3)
P 		62.4
(-1.6)
P 		129.2
(2.8)
P 		131.5
(3)
P 		90
C 53.4
(-0.9)
P 		56.3
(-0.7)
P 		26.3
(-3)
P 		46.7
(-1.4)
P 		87.2
(1.7)
P 		103.3
(3)
P 		77
avr 50.9
(-1.7) 		56.8
(-1.2) 		37
(-3) 		53.8
(-1.5) 		103.1
(3) 		96.7
(2.4) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189269_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17039
Sequence Type Exemplar sequence
Representative Public ID C55B6.1 NCBI
Target Description C55B6.1 /REP_DB=WormBase Gene ID /WP=CE09007 /TR=P91190 /GB=AAB42302.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glycerol kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029332(11), NM_001029333(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029332 NCBI Caenorhabditis elegans C55B6.1a (C55B6.1) mRNA, complete cds. 11/11 None
NM_001029333 NCBI Caenorhabditis elegans C55B6.1b (C55B6.1) mRNA, complete cds. 11/11 None
GENEFINDER00000023845 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7200335:7203757:1 11/11 None
SNAP00000023844 ENSEMBL cdna:SNAP chromosome:CEL140:X:7201578:7203771:1 11/11 None
C55B6.1a ENSEMBL cdna:known chromosome:CEL140:X:7200318:7203964:1 gene:C55B6.1 11/11 None
C55B6.1b ENSEMBL cdna:known chromosome:CEL140:X:7200753:7203771:1 gene:C55B6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7200333-7203770(+) 100.0 100.0
Public Domain and Genome References
Ensembl C55B6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42302 Hypothetical protein C55B6.1a [Caenorhabditis elegans] ref|NP_001024503.1| C55B6.1a [Caenorhabditis elegans] 0.0
blast CAE65856 Hypothetical protein CBG10994 [Caenorhabditis briggsae] 0.0
blast CAE65856 Hypothetical protein CBG10994 [Caenorhabditis briggsae] 1.0E-180
blast AAU05583 Hypothetical protein C55B6.1b [Caenorhabditis elegans] ref|NP_001024504.1| C55B6.1b [Caenorhabditis elegans] 1.0E-173
Protein Domains
Database ID Description E-Value
Pfam IPR000577 EMBL-EBI Carbohydrate kinase, FGGY 1.6E-15
Pfam IPR000577 EMBL-EBI Carbohydrate kinase, FGGY 1.6E-15
Pfam IPR000577 EMBL-EBI Carbohydrate kinase, FGGY 1.6E-15
Pfam IPR000577 EMBL-EBI Carbohydrate kinase, FGGY 1.6E-15
Sequence
Target Sequence 
>C. ELEGANS:189269_AT
gggaaacgctcatgacacagctgtaattttgcattgggctcagtcgattggactcttcaa
tgatgtgacggagacttcagacattgctctatcagtgaatgattccaatggagtagtgtt
catcccagcattctgtggaattcaaactccaatcaatgatgagacggcgtgttcaggatt
tatgtgtatccgacctgacactacaaaagtacacatggtccgtgcaattctggagtcaat
tgctttccgtgtttatcaaatctacgctgctgccgagtcggaggttaacattaacaaaaa
ctctccagtcagaatttgtggaggagtttcgaataacaattttatctgccagtgcattgc
tgatcttttgggacgtaaagtcgaaagaatgactgattctgatcacgttgctgctcgcgg
tgttgctcttctgacgggattctccagtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAAACGCTCATGACACAGCTGTA 334 493 936 Antisense
TTGCATTGGGCTCAGTCGATTGGAC 551 697 964 Antisense
GGAGACTTCAGACATTGCTCTATCA 524 519 1005 Antisense
GTGTTCATCCCAGCATTCTGTGGAA 440 485 1051 Antisense
GAGACGGCGTGTTCAGGATTTATGT 237 393 1096 Antisense
ATGTGTATCCGACCTGACACTACAA 680 49 1117 Antisense
GTACACATGGTCCGTGCAATTCTGG 304 461 1144 Antisense
AGTCAATTGCTTTCCGTGTTTATCA 489 61 1169 Antisense
TTATCAAATCTACGCTGCTGCCGAG 36 679 1188 Antisense
GTGCATTGCTGATCTTTTGGGACGT 297 481 1287 Antisense
CTCTTCTGACGGGATTCTCCAGTGG 170 229 1361 Antisense
Sequence Source Affymetrix Proprietary Database