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[189267_s_at] adenylate kinase

Description F38B2.4 /REP_DB=WormBase Gene ID /WP=CE02218 /TR=Q20140 /GB=CAA90364.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=adenylate kinase
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 51      4grp_highest_8_8 > 40      4grp_high_8_8 > 50      6grp_highest_nonorm > 25      6grp_total > 41      4grp_total > 53      6grp_highest_sub > 04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4178
1 2 3 4 range
A 4514.5
(3)
P 		3124
(1)
P 		2951.5
(0.7)
P 		426.9
(-3)
P 		4088
B 3778.9
(3)
P 		3472.6
(2.5)
P 		2904.5
(1.5)
P 		336.3
(-3)
P 		3443
C 4265.7
(3)
P 		3326.1
(1.5)
P 		3064.3
(1.1)
P 		468.7
(-3)
P 		3797
avr 4186.4
(3) 		3307.6
(1.6) 		2973.4
(1.1) 		410.6
(-3) 		3776

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2948
1 2 3 4 5 6 range
A 3629.7
(0.9)
P 		4014.2
(1.8)
P 		4537.6
(3)
P 		4183.8
(2.2)
P 		3404.4
(0.4)
P 		1931.7
(-3)
P 		2606
B 3328.4
(-0.6)
P 		4288.4
(1.6)
P 		4879.4
(3)
P 		4619
(2.4)
P 		3691.4
(0.3)
P 		2267.3
(-3)
P 		2612
C 3037.2
(-1.5)
P 		4579.9
(2.9)
P 		4343.7
(2.3)
P 		4601.9
(3)
P 		2861.5
(-2)
P 		2495.8
(-3)
P 		2106
avr 3331.8
(-0.2) 		4294.2
(2.3) 		4586.9
(3) 		4468.2
(2.7) 		3319.1
(-0.2) 		2231.6
(-3) 		2355
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1581
1 2 3 4 range
A 1643.7
(3)
P 		678.1
(-0.7)
P 		771.6
(-0.3)
P 		62.5
(-3)
P 		1581
B 1205.1
(3)
P 		857.6
(1.2)
P 		673
(0.2)
P 		71.7
(-3)
P 		1133
C 1412.1
(3)
P 		956.3
(0.9)
P 		1068
(1.5)
P 		79
(-3)
P 		1333
avr 1420.3
(3) 		830.7
(0.4) 		837.5
(0.4) 		71.1
(-3) 		1349

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1030
1 2 3 4 5 6 range
A 669.1
(-1.8)
P 		1427.7
(3)
P 		988.2
(0.2)
P 		1061.1
(0.7)
P 		1027.3
(0.5)
P 		470.3
(-3)
P 		957
B 1158.1
(-0.1)
P 		1427.4
(2.3)
P 		1184.9
(0.1)
P 		1223.4
(0.5)
P 		1499.8
(3)
P 		845.5
(-3)
P 		654
C 1125.8
(0.1)
P 		1397.5
(3)
P 		1105.5
(-0.1)
P 		925.4
(-2)
P 		925.9
(-2)
P 		835.5
(-3)
P 		562
avr 984.3
(-0.7) 		1417.5
(3) 		1092.9
(0.2) 		1070
(0) 		1151
(0.7) 		717.1
(-3) 		700
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189267_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16248
Sequence Type Exemplar sequence
Representative Public ID F38B2.4 NCBI
Target Description F38B2.4 /REP_DB=WormBase Gene ID /WP=CE02218 /TR=Q20140 /GB=CAA90364.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=adenylate kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077483(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077483 NCBI Caenorhabditis elegans F38B2.4 (F38B2.4) mRNA, complete cds. 11/11 None
SNAP00000008615 ENSEMBL cdna:SNAP chromosome:CEL140:X:11286640:11287638:-1 11/11 None
GENEFINDER00000008623 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11286640:11287638:-1 11/11 None
F38B2.4.2 ENSEMBL cdna:known chromosome:CEL140:X:11286367:11287641:-1 gene:F38B2.4 11/11 None
F38B2.4.1 ENSEMBL cdna:known chromosome:CEL140:X:11286367:11287642:-1 gene:F38B2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11286639-11287638(-) 100.0 100.0
Public Domain and Genome References
Gene Title adenylate kinase
Ensembl F38B2.4
Entrez Gene 181317 Entrez gene
SwissProt Q20140 EMBL-EBI
WormBase CE02218 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251426_AT uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putative at
CANINE:1599005_AT similar to Adenylate kinase isoenzyme 1 (ATP-AMP transphosphorylase) (AK1) (Myokinase) cfa
CANINE_2:CFA.7165.1.S1_S_AT similar to Adenylate kinase isoenzyme 1 (ATP-AMP transphosphorylase) (AK1) (Myokinase) cfa
CANINE_2:CFA.7165.2.S1_AT similar to Adenylate kinase isoenzyme 1 (ATP-AMP transphosphorylase) (AK1) (Myokinase) cfa
DROSOPHILA_2:1631377_A_AT Adenylate kinase-1 dm
DROSGENOME1:148641_AT Adenylate kinase-1 dm
HG-U133_PLUS_2:202587_S_AT adenylate kinase 1 hs
HG-FOCUS:202587_S_AT adenylate kinase 1 hs
HG-U133A_2:202587_S_AT adenylate kinase 1 hs
HG-U133A:202587_S_AT adenylate kinase 1 hs
HG-U133_PLUS_2:202588_AT adenylate kinase 1 hs
HG-U133A:202588_AT adenylate kinase 1 hs
HG-U133A_2:202588_AT adenylate kinase 1 hs
HU35KSUBC:RC_W23690_S_AT adenylate kinase 1 hs
HUGENEFL:J04809_RNA1_AT adenylate kinase 1 hs
U133_X3P:G4502010_3P_AT adenylate kinase 1 hs
U133_X3P:G12654562_3P_A_AT adenylate kinase 1 hs
HG-U95AV2:36997_AT adenylate kinase 1 hs
MOE430A:1422184_A_AT adenylate kinase 1 mm
MOUSE430A_2:1422184_A_AT adenylate kinase 1 mm
MOUSE430_2:1422184_A_AT adenylate kinase 1 mm
MU11KSUBB:MSA.3851.0_S_AT adenylate kinase 1 mm
MU11KSUBB:MSA.9533.0_F_AT adenylate kinase 1 mm
MU11KSUBB:MSA.11374.0_F_AT adenylate kinase 1 mm
MG-U74AV2:96801_AT adenylate kinase 1 mm
MOE430A:1423988_AT adenylate kinase 1 mm
MOUSE430A_2:1423988_AT adenylate kinase 1 mm
MOUSE430_2:1423988_AT adenylate kinase 1 mm
MU19KSUBB:TC26836_AT Adenylate kinase 1, mRNA (cDNA clone MGC:25242 IMAGE:4505142) mm
MU19KSUBB:TC31865_AT Adenylate kinase 1, mRNA (cDNA clone MGC:25242 IMAGE:4505142) mm
MU19KSUBC:TC39588_AT Adenylate kinase 1, mRNA (cDNA clone MGC:25242 IMAGE:4505142) mm
MU19KSUBC:TC39588_G_AT Adenylate kinase 1, mRNA (cDNA clone MGC:25242 IMAGE:4505142) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
46034 ATP metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4017 adenylate kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90364 Hypothetical protein F38B2.4 [Caenorhabditis elegans] ref|NP_509884.1| F38B2.4 [Caenorhabditis elegans] gb|AAG50236.1| adenylate kinase 1 [Caenorhabditis elegans] sp|Q20140|KAD1_CAEEL Probable adenylate kinase isoenzyme F38B2.4 (ATP-AMP transphosphorylase) 1.0E-112
blast CAE70669 Hypothetical protein CBG17377 [Caenorhabditis briggsae] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR000850 EMBL-EBI Adenylate kinase 2.2E-77
Sequence
Target Sequence 
>C. ELEGANS:189267_S_AT
taaaagctgccggtgttccaatcttcttcattgttggaggaccaggatctggaaagggaa
cccaatgtgacaaaattgttgccaagtatggattgactcacttgtcatccggagatcttc
tccgtgacgaagtaaaatctggatctccacgtggagcccagctcaccgctatcatggagt
ccggagccctcgttccattggaagttgttctggacttggtcaaagaagcaatgctcaagg
ctattgaaaagggaagcaagggattcctcattgacggatacccaagagaagttgctcaag
gacagcagttcgagtctgagatccaagaagccaagttggtattgttctttgatgtcgccg
aagaaacgttggtcaagagactcttgcatcgcgctcaaaccagtggaagagccgatgaca
acgctgacactatcaaaaagcgtctccatacctttgttacctccactgccccagttgttg
attactacgagtccaaaggaaaacttgttagaatcaatgccgaaggttccgttgatgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAAAGCTGCCGGTGTTCCAATCTT 591 639 56 Antisense
GACTCACTTGTCATCCGGAGATCTT 680 373 150 Antisense
AATCTGGATCTCCACGTGGAGCCCA 129 165 191 Antisense
AGCTCACCGCTATCATGGAGTCCGG 596 77 215 Antisense
GAGCCCTCGTTCCATTGGAAGTTGT 544 383 239 Antisense
GGGATTCCTCATTGACGGATACCCA 660 495 315 Antisense
TGGTATTGTTCTTTGATGTCGCCGA 361 551 392 Antisense
GTCAAGAGACTCTTGCATCGCGCTC 590 463 427 Antisense
GAGCCGATGACAACGCTGACACTAT 696 385 464 Antisense
CTCCACTGCCCCAGTTGTTGATTAC 669 235 516 Antisense
CAATGCCGAAGGTTCCGTTGATGAT 82 181 570 Antisense
Sequence Source Affymetrix Proprietary Database