[Home] | [Total List]

[189261_at] acid phosphatase

Description F21A3.2 /REP_DB=WormBase Gene ID /WP=CE09516 /TR=O17825 /GB=CAB04153.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=acid phosphatase
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 83      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 64      6grp_total > 74      4grp_total > 03      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2881
1 2 3 4 range
A 777.3
(-2.7)
P 		709.8
(-2.9)
P 		640.8
(-3)
P 		3408.3
(3)
P 		2768
B 904.8
(-2.3)
P 		705.8
(-2.7)
P 		562
(-3)
P 		3334.9
(3)
P 		2773
C 824.3
(-2.3)
P 		701.3
(-2.6)
P 		527.5
(-3)
P 		3236
(3)
P 		2709
avr 835.5
(-2.4) 		705.6
(-2.7) 		576.8
(-3) 		3326.4
(3) 		2750

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1310
1 2 3 4 5 6 range
A 392.9
(-3)
P 		527.5
(-2.3)
P 		884.4
(-0.6)
P 		1625
(3)
P 		1042.7
(0.2)
P 		1121.2
(0.5)
P 		1232
B 314.9
(-3)
P 		488.4
(-1.9)
P 		868.6
(0.4)
P 		1305.2
(3)
P 		1157.7
(2.1)
P 		1014.8
(1.2)
P 		990
C 401.2
(-3)
P 		473.7
(-2.6)
P 		1005.5
(0.2)
P 		1527.6
(3)
P 		1180.1
(1.1)
P 		1174.5
(1.1)
P 		1126
avr 369.7
(-3) 		496.5
(-2.3) 		919.5
(-0) 		1485.9
(3) 		1126.8
(1.1) 		1103.5
(0.9) 		1116
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 581
1 2 3 4 range
A 283
(-0.8)
P 		154.1
(-3)
P 		167.5
(-2.8)
P 		498.9
(3)
P 		345
B 288.5
(-1.4)
P 		174.3
(-2.5)
P 		130.2
(-3)
P 		710.7
(3)
P 		581
C 272.9
(-1.5)
P 		201.6
(-2.7)
P 		183.9
(-3)
P 		545.6
(3)
P 		362
avr 281.5
(-1.3) 		176.7
(-2.8) 		160.5
(-3) 		585.1
(3) 		425

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 398
1 2 3 4 5 6 range
A 72.4
(-3)
P 		187.6
(-1)
P 		192.6
(-0.9)
P 		412.1
(3)
P 		314.6
(1.3)
P 		273
(0.5)
P 		340
B 109.6
(-3)
P 		162.6
(-2.1)
P 		210.9
(-1.3)
P 		345.7
(0.9)
P 		470.3
(3)
P 		378.4
(1.5)
P 		361
C 148.7
(-2.9)
P 		144.6
(-3)
P 		255.9
(-0.3)
P 		307.2
(0.9)
P 		381.8
(2.7)
P 		393.2
(3)
P 		249
avr 110.2
(-3) 		164.9
(-1.8) 		219.8
(-0.6) 		355
(2.3) 		388.9
(3) 		348.2
(2.1) 		279
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189261_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13255
Sequence Type Exemplar sequence
Representative Public ID F21A3.2 NCBI
Target Description F21A3.2 /REP_DB=WormBase Gene ID /WP=CE09516 /TR=O17825 /GB=CAB04153.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=acid phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074463(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074463 NCBI Caenorhabditis elegans F21A3.2 (F21A3.2) mRNA, complete cds. 11/11 None
SNAP00000007991 ENSEMBL cdna:SNAP chromosome:CEL140:V:15533424:15535773:-1 9/11 None
GENEFINDER00000007996 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15533424:15534431:-1 10/11 None
F21A3.2 ENSEMBL cdna:known chromosome:CEL140:V:15533394:15535809:-1 gene:F21A3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15533423-15535578(-) 100.0 100.0
Public Domain and Genome References
Gene Title acid phosphatase
Ensembl F21A3.2
Entrez Gene 180045 Entrez gene
SwissProt O17825 EMBL-EBI
WormBase CE31909 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257087_AT calcineurin-like phosphoesterase family protein at
CANINE_2:CFAAFFX.9363.1.S1_AT similar to CG1637-PC, isoform C cfa
DROSOPHILA_2:1623285_AT dm
DROSGENOME1:153615_AT dm
DROSOPHILA_2:1633563_AT dm
DROSOPHILA_2:1624797_AT dm
HG-U95E:72640_AT FLJ16165 protein hs
MOUSE430_2:1440887_AT RIKEN cDNA C330005M16 gene mm
MOE430B:1440887_AT RIKEN cDNA C330005M16 gene mm
MG-U74BV2:164070_AT RIKEN cDNA C330005M16 gene mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04153 Hypothetical protein F21A3.2 [Caenorhabditis elegans] ref|NP_506864.2| F21A3.2 [Caenorhabditis elegans] 0.0
blast CAE71626 Hypothetical protein CBG18591 [Caenorhabditis briggsae] 0.0
blast CAE71639 Hypothetical protein CBG18606 [Caenorhabditis briggsae] 0.0
blast CAE71626 Hypothetical protein CBG18591 [Caenorhabditis briggsae] 1.0E-156
blast CAE71639 Hypothetical protein CBG18606 [Caenorhabditis briggsae] 1.0E-154
blast CAB04153 Hypothetical protein F21A3.2 [Caenorhabditis elegans] ref|NP_506864.2| F21A3.2 [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 7.0E-22
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.7E-16
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 6.7E-5
Sequence
Target Sequence 
>C. ELEGANS:189261_AT
ctccaatcgccacaatatcccatggatcataaccatgggccatcgacccatattcgaacg
ggccttccattgactcatggatacgcgctggaaaagttgttctacgaatatggcgtcgat
gtggagctatgggcacacgagcacagttacgagaggctatggccggtgtacaatcgaact
gtgtataatgggacacggcatccatatgtggatccgccggcgcctgtacacattatcacg
ggatcggcgggttgccgagaaaacacggacgtcttcgttgagcatccgcctccatggagt
gccgtaagatccactgattatggttttggagtgatgagggtttacaactcgacccacttg
aacttcaagcagataaatgtagcgcaggaaggcaaaatagacgacgacttctgggttgta
aagtcatcgccgaagcaccataggccgttcaagcatcgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCAATCGCCACAATATCCCATGG 29 237 706 Antisense
GCCATCGACCCATATTCGAACGGGC 481 277 744 Antisense
CATTGACTCATGGATACGCGCTGGA 91 217 773 Antisense
ATGGCGTCGATGTGGAGCTATGGGC 239 51 815 Antisense
GAGGCTATGGCCGGTGTACAATCGA 319 405 858 Antisense
CCGGCGCCTGTACACATTATCACGG 30 265 922 Antisense
AACACGGACGTCTTCGTTGAGCATC 154 137 967 Antisense
TCCGCCTCCATGGAGTGCCGTAAGA 575 595 990 Antisense
TTTACAACTCGACCCACTTGAACTT 546 657 1046 Antisense
AAGTCATCGCCGAAGCACCATAGGC 213 157 1126 Antisense
ACCATAGGCCGTTCAAGCATCGTGA 127 87 1142 Antisense
Sequence Source Affymetrix Proprietary Database