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[189258_at]

Description W04G3.6 /REP_DB=WormBase Gene ID /WP=CE03790 /TR=Q23167 /GB=CAA92028.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=dra like protein
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 01      4grp_high_8_8 > 32      6grp_highest_nonorm > 90      6grp_total > 33      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 70      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 273.4
(3)
P 		128.1
(-3)
P 		173.6
(-1.1)
P 		143.8
(-2.4)
P 		145
B 255.3
(3)
P 		98.8
(-1.7)
P 		122.1
(-1)
P 		54.7
(-3)
A 		201
C 262
(3)
P 		178.7
(0.6)
P 		146.7
(-0.3)
P 		52.9
(-3)
A 		209
avr 263.6
(3) 		135.2
(-1.3) 		147.5
(-0.9) 		83.8
(-3) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 243.7
(2.9)
P 		153.9
(-0.9)
P 		246.6
(3)
P 		127.1
(-2)
P 		159.9
(-0.7)
P 		104.2
(-3)
P 		142
B 224.3
(3)
P 		138.6
(-0.5)
P 		179.3
(1.2)
P 		169.8
(0.8)
P 		159.6
(0.4)
P 		77.6
(-3)
P 		147
C 205.4
(2.9)
P 		178.9
(1.6)
P 		207.4
(3)
P 		156.4
(0.4)
P 		145.5
(-0.1)
P 		88.4
(-3)
P 		119
avr 224.5
(3) 		157.1
(-0) 		211.1
(2.4) 		151.1
(-0.3) 		155
(-0.1) 		90.1
(-3) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 99.5
(3)
P 		27.8
(-2.5)
P 		45.4
(-1.1)
P 		21.1
(-3)
P 		78
B 81.4
(3)
P 		24.4
(-1.9)
P 		28.3
(-1.6)
P 		11.7
(-3)
A 		70
C 86.7
(3)
P 		51.4
(0.3)
P 		51.1
(0.3)
P 		8.9
(-3)
A 		78
avr 89.2
(3) 		34.5
(-1.4) 		41.6
(-0.8) 		13.9
(-3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 44.9
(1)
P 		54.7
(3)
P 		53.7
(2.8)
P 		32.2
(-1.6)
P 		48.3
(1.7)
P 		25.4
(-3)
P 		29
B 78.1
(3)
P 		46.1
(-0.9)
P 		43.6
(-1.2)
P 		45
(-1)
P 		64.8
(1.4)
P 		28.9
(-3)
P 		49
C 76.1
(3)
P 		54.6
(0.2)
P 		52.8
(-0)
P 		31.5
(-2.8)
P 		47.1
(-0.7)
P 		29.6
(-3)
P 		47
avr 66.4
(3) 		51.8
(0.7) 		50
(0.4) 		36.2
(-1.7) 		53.4
(1) 		28
(-3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189258_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16950
Sequence Type Exemplar sequence
Representative Public ID W04G3.6 NCBI
Target Description W04G3.6 /REP_DB=WormBase Gene ID /WP=CE03790 /TR=Q23167 /GB=CAA92028.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=dra like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077454(11), AY887914(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077454 NCBI Caenorhabditis elegans SULfate Permease family member (sulp-7) (sulp-7) mRNA, complete cds. 11/11 None
AY887914 NCBI Caenorhabditis elegans anion transporter SULP-7b (sulp-7) mRNA, complete cds, alternatively spliced. 11/11 None
SNAP00000042827 ENSEMBL cdna:SNAP chromosome:CEL140:X:11080602:11083016:1 9/11 None
GENEFINDER00000042837 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11080602:11083729:1 11/11 None
W04G3.6 ENSEMBL cdna:known chromosome:CEL140:X:11080600:11087370:1 gene:W04G3.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
AY887915 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11080601-11082357(+) 100.0 100.0
Public Domain and Genome References
Ensembl W04G3.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92028 Hypothetical protein W04G3.6d [Caenorhabditis elegans] ref|NP_509855.2| SULfate Permease family member (sulp-7) [Caenorhabditis elegans] gb|AAX34428.1| anion transporter SULP-7d [Caenorhabditis elegans] 0.0
blast CAE70707 Hypothetical protein CBG17447 [Caenorhabditis briggsae] 1.0E-155
blast CAE70707 Hypothetical protein CBG17447 [Caenorhabditis briggsae] 1.0E-154
blast CAJ30233 Hypothetical protein W04G3.6c [Caenorhabditis elegans] gb|AAX34427.1| anion transporter SULP-7c [Caenorhabditis elegans] 1.0E-150
blast CAA92028 Hypothetical protein W04G3.6d [Caenorhabditis elegans] ref|NP_509855.2| SULfate Permease family member (sulp-7) [Caenorhabditis elegans] gb|AAX34428.1| anion transporter SULP-7d [Caenorhabditis elegans] 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR001902 EMBL-EBI Sulphate transporter 1.6E-81
Pfam IPR002645 EMBL-EBI Sulfate transporter/antisigma-factor antagonist STAS 7.9E-8
Pfam IPR001902 EMBL-EBI Sulphate transporter 1.4E-50
Pfam IPR001902 EMBL-EBI Sulphate transporter 1.5E-8
Pfam IPR001902 EMBL-EBI Sulphate transporter 5.0E-29
Pfam IPR001902 EMBL-EBI Sulphate transporter 6.9E-59
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509855.2 12 32-54,69-91,119-141,145-167,174-196,206-228,235-257,288-310,323-345,360-377,379-401,416-449
AAX34426.1 7 29-51,55-77,84-106,116-138,145-167,198-220,233-255
W04G3.6 12 32-54,69-91,119-141,145-167,174-196,206-228,235-257,288-310,323-345,360-377,379-401,416-449
SNAP00000042827 5 58-80,121-143,182-204,236-258,271-293
GENEFINDER00000042837 10 32-54,69-91,119-141,145-167,174-196,206-228,235-257,288-310,323-345,360-382
Sequence
Target Sequence 
>C. ELEGANS:189258_AT
aattcttggtgttgctttgccacgccattccggaataggaaaacttttttttatttatca
agacttgattaccgcaataattggtgaaaaagtgaatgttatcacttttggtgcttctgt
agtggcaatcgtaatattatacatttcaaaatacattttgacgccacggttctgtgcgaa
aacgttggttcctataccttttgatctatttttgattgtaattggaacaatcatcgcgga
ctggtttcaggtagaggagagatggggagttaaagttgtaggcgatataccaactggatt
tccaaatcccgcgttaccggatttgttcatgtttaggcatgtaattggcgacgctctagc
tattgcaattgtatctgttgttgtgacagtatccatgggaaaggttattgccaagaaaca
caattatgaaatagacgttcgccaagaattttttgccctcgggattgtggcttccacctg
ttcaatgtttccatgttggccagcaacaaccgcattggcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTTGGTGTTGCTTTGCCACGC 634 175 531 Antisense
TTGCCACGCCATTCCGGAATAGGAA 631 697 547 Antisense
TTTGACGCCACGGTTCTGTGCGAAA 224 667 687 Antisense
GGTTCCTATACCTTTTGATCTATTT 534 507 717 Antisense
CAATCATCGCGGACTGGTTTCAGGT 157 181 758 Antisense
ATCCCGCGTTACCGGATTTGTTCAT 236 39 836 Antisense
TTGGCGACGCTCTAGCTATTGCAAT 192 707 875 Antisense
GTTCGCCAAGAATTTTTTGCCCTCG 106 441 967 Antisense
TTTTTGCCCTCGGGATTGTGGCTTC 274 673 980 Antisense
TTCCACCTGTTCAATGTTTCCATGT 486 699 1002 Antisense
GGCCAGCAACAACCGCATTGGCGAG 42 545 1028 Antisense
Sequence Source Affymetrix Proprietary Database