[Home] | [Total List]

[189257_at]

Description T07G12.7 /REP_DB=WormBase Gene ID /WP=CE13399 /TR=O18059 /GB=CAB05272.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=TC5 transposase
Cluster 6grp_total > 02      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 35.6
(-1)
A 		11.6
(-3)
A 		66.1
(1.4)
P 		85.4
(3)
P 		74
B 54.4
(3)
A 		36.4
(-3)
A 		46.5
(0.4)
A 		41.5
(-1.3)
A 		18
C 41.1
(-1.8)
A 		60.4
(-0.8)
A 		19.6
(-3)
A 		130.8
(3)
P 		111
avr 43.7
(-2.1) 		36.1
(-3) 		44.1
(-2) 		85.9
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 11
(-1.9)
A 		18.8
(-0.9)
A 		25.1
(-0.1)
A 		2.2
(-3)
A 		49.3
(3)
A 		23.5
(-0.3)
A 		47
B 34.1
(-0.7)
A 		47.5
(1.2)
A 		29.1
(-1.4)
A 		60.5
(3)
A 		25.5
(-1.9)
A 		17.5
(-3)
A 		43
C 46.5
(2.6)
A 		49.6
(3)
A 		2.4
(-3)
A 		9.6
(-2.1)
A 		13.5
(-1.6)
A 		27.2
(0.2)
A 		47
avr 30.5
(0.5) 		38.6
(3) 		18.9
(-3) 		24.1
(-1.4) 		29.4
(0.2) 		22.7
(-1.8) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 13
(1.3)
A 		2.5
(-3)
A 		17.3
(3)
P 		12.5
(1.1)
P 		15
B 17.3
(3)
A 		9
(-2.9)
A 		10.8
(-1.6)
A 		8.8
(-3)
A 		9
C 13.6
(-0.3)
A 		17.4
(1.2)
A 		6.8
(-3)
A 		22.1
(3)
P 		15
avr 14.6
(3) 		9.6
(-3) 		11.6
(-0.6) 		14.5
(2.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 2
(-2.4)
A 		6.7
(-0.4)
A 		5.5
(-0.9)
A 		0.6
(-3)
A 		14.9
(3)
A 		5.7
(-0.9)
A 		14
B 11.9
(0.4)
A 		15.8
(2.9)
A 		7.1
(-2.6)
A 		16
(3)
A 		10.4
(-0.5)
A 		6.5
(-3)
A 		10
C 17.2
(3)
A 		15.1
(2.2)
A 		0.6
(-3)
A 		1.9
(-2.5)
A 		4.4
(-1.6)
A 		9.1
(0.1)
A 		17
avr 10.4
(1.4) 		12.5
(3) 		4.4
(-3) 		6.2
(-1.7) 		9.9
(1.1) 		7.1
(-1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189257_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9955
Sequence Type Exemplar sequence
Representative Public ID T07G12.7 NCBI
Target Description T07G12.7 /REP_DB=WormBase Gene ID /WP=CE13399 /TR=O18059 /GB=CAB05272.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=TC5 transposase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069548(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069548 NCBI Caenorhabditis elegans T07G12.7 (T07G12.7) mRNA, complete cds. 11/11 A 
SNAP00000001201 ENSEMBL cdna:SNAP chromosome:CEL140:I:2147121:2147564:-1 10/11 None
GENEFINDER00000001220 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2147121:2147564:-1 10/11 None
SNAP00000026260 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10549187:10551099:1 11/11 None
GENEFINDER00000026267 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10549187:10551099:1 11/11 None
T07G12.7 ENSEMBL cdna:known chromosome:CEL140:IV:10549187:10551099:1 gene:T07G12.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Ensembl T07G12.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501949 T07G12.7 [Caenorhabditis elegans] 0.0
blast T24039 hypothetical protein R07H5.6 - Caenorhabditis elegans 0.0
blast AAB94140 Hypothetical protein M116.3 [Caenorhabditis elegans] ref|NP_501429.2| M116.3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.1.Centromere-binding All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding 0.219999998807907
Pfam IPR004906 EMBL-EBI Tc5 transposase 1.0E-126
Pfam IPR007350 EMBL-EBI Tc5 transposase, C-terminal 1.1E-34
Pfam IPR004875 EMBL-EBI CENP-B protein 8.5E-77
Pfam IPR004906 EMBL-EBI Tc5 transposase 1.3E-89
Pfam IPR004906 EMBL-EBI Tc5 transposase 3.9E-59
Pfam IPR007350 EMBL-EBI Tc5 transposase, C-terminal 1.1E-34
Pfam IPR004875 EMBL-EBI CENP-B protein 8.5E-77
Pfam IPR007350 EMBL-EBI Tc5 transposase, C-terminal 8.3E-25
Pfam IPR004875 EMBL-EBI CENP-B protein 2.1E-23
Sequence
Target Sequence 
>C. ELEGANS:189257_AT
tcaatcccatatcatctacgctggaatcgagttcaagccccatgagcgtgacaatattct
ccgtttgatttcggccgtgtacttctttttctgtgcacccagattcgagacatgctggca
gtacggttggttcaaaggaggctacattgactcacatccatctgaattcgagacaccttc
caaatactgtctcgaagctactggcaaatgcatactacaatgccaaaacgcggcatatgt
ccgttgtccatattgcaaaaaatgtatctgctttcaccattgggtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATCCCATATCATCTACGCTGGA 455 633 1269 Antisense
GCTGGAATCGAGTTCAAGCCCCATG 228 295 1288 Antisense
AAGCCCCATGAGCGTGACAATATTC 94 149 1303 Antisense
ATTCTCCGTTTGATTTCGGCCGTGT 341 7 1324 Antisense
GTGCACCCAGATTCGAGACATGCTG 430 481 1361 Antisense
ACATGCTGGCAGTACGGTTGGTTCA 512 105 1378 Antisense
GAGGCTACATTGACTCACATCCATC 407 405 1406 Antisense
GAATTCGAGACACCTTCCAAATACT 45 323 1432 Antisense
AATACTGTCTCGAAGCTACTGGCAA 115 173 1451 Antisense
AAACGCGGCATATGTCCGTTGTCCA 75 125 1494 Antisense
TGTATCTGCTTTCACCATTGGGTGG 71 559 1531 Antisense
Sequence Source Affymetrix Proprietary Database