[Home] | [Total List]

[189252_s_at] 7TM chemoreceptor, srt family /// 7TM chemoreceptor, srt family

Description Y45G12C.5 /REP_DB=WormBase Gene ID /WP=CE21939 /TR=Q9N4Y3 /GB=AAF60589.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 74      4grp_total > 02      6grp_cgc > 76      6grp_cgc_sub > 03_04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 12.6
(-2.1)
A 		6.8
(-3)
A 		46.3
(3)
A 		40.9
(2.2)
A 		40
B 26.3
(1.1)
A 		37.2
(3)
A 		2.2
(-3)
A 		36.3
(2.8)
A 		35
C 7.9
(-2.3)
A 		3.4
(-2.8)
A 		1.9
(-3)
A 		55.5
(3)
A 		54
avr 15.6
(-3) 		15.8
(-3) 		16.8
(-2.7) 		44.2
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 8.1
(-2.5)
A 		3.3
(-3)
A 		60.4
(3)
A 		12.3
(-2.1)
A 		38.4
(0.7)
A 		32.5
(0.1)
A 		57
B 6.2
(-2.6)
A 		24.1
(0.2)
A 		3.3
(-3)
A 		42.2
(3)
A 		5.5
(-2.7)
A 		4.8
(-2.8)
A 		39
C 26.3
(1.4)
A 		27.7
(1.7)
A 		4.7
(-3)
A 		27.8
(1.7)
A 		28.7
(1.9)
A 		34.1
(3)
A 		29
avr 13.5
(-3) 		18.4
(-0.9) 		22.8
(1) 		27.4
(3) 		24.2
(1.6) 		23.8
(1.4) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.6
(-1.2)
A 		1.5
(-3)
A 		12.1
(3)
A 		6
(-0.5)
A 		11
B 8.4
(2.4)
A 		9.2
(3)
A 		0.5
(-3)
A 		7.7
(2)
A 		9
C 2.6
(-1.6)
A 		1
(-2.7)
A 		0.6
(-3)
A 		9.4
(3)
A 		9
avr 5.2
(-0.9) 		3.9
(-3) 		4.4
(-2.2) 		7.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.5
(-2.9)
A 		1.2
(-3)
A 		13.2
(3)
A 		3.1
(-2.1)
A 		11.6
(2.2)
A 		7.9
(0.4)
A 		12
B 2.2
(-2.2)
A 		8
(1.2)
A 		0.8
(-3)
A 		11.2
(3)
A 		2.3
(-2.1)
A 		1.8
(-2.4)
A 		10
C 9.8
(2.1)
A 		8.5
(1.3)
A 		1.2
(-3)
A 		5.6
(-0.4)
A 		9.3
(1.8)
A 		11.4
(3)
A 		10
avr 4.5
(-3) 		5.9
(-0.4) 		5.1
(-1.9) 		6.6
(0.9) 		7.7
(3) 		7
(1.7) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189252_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14877
Sequence Type Exemplar sequence
Representative Public ID Y45G12C.5 NCBI
Target Description Y45G12C.5 /REP_DB=WormBase Gene ID /WP=CE21939 /TR=Q9N4Y3 /GB=AAF60589.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071267(11), NM_071294(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071267 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-1) (srt-1) mRNA, complete cds. 11/11 None
NM_071294 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-2) (srt-2) mRNA, complete cds. 11/11 None
SNAP00000043311 ENSEMBL cdna:SNAP chromosome:CEL140:V:2540794:2545891:1 11/11 None
GENEFINDER00000043327 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2539912:2545891:1 11/11 None
C13B7.1 ENSEMBL cdna:known chromosome:CEL140:V:2435553:2437612:1 gene:C13B7.1 11/11 None
Y45G12C.5 ENSEMBL cdna:known chromosome:CEL140:V:2543832:2545891:1 gene:Y45G12C.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2435552-2437612(+) 100.0 100.0
chrV:2543831-2545891(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
7TM chemoreceptor, srt family
Gene Symbol srt-1
srt-2
Ensembl C13B7.1
Y45G12C.5
Entrez Gene 182561 Entrez gene
189934 Entrez gene
SwissProt Q9UAU9 EMBL-EBI
WormBase CE21939 Wormbase
CE21939 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14707 Serpentine receptor, class t protein 1 [Caenorhabditis elegans] ref|NP_503695.1| Serpentine Receptor, class T family member (srt-2) [Caenorhabditis elegans] ref|NP_503668.1| Serpentine Receptor, class T family member (srt-1) [Caenorhabditis elegans] gb|AAF60589.1| Serpentine receptor, class t protein 2 [Caenorhabditis elegans] 0.0
blast AAD14708 Seven tm receptor protein 120 [Caenorhabditis elegans] ref|NP_503667.1| Seven TM Receptor family member (str-120) [Caenorhabditis elegans] 1.0E-175
blast AAD14707 Serpentine receptor, class t protein 1 [Caenorhabditis elegans] ref|NP_503695.1| Serpentine Receptor, class T family member (srt-2) [Caenorhabditis elegans] ref|NP_503668.1| Serpentine Receptor, class T family member (srt-1) [Caenorhabditis elegans] gb|AAF60589.1| Serpentine receptor, class t protein 2 [Caenorhabditis elegans] 1.0E-159
blast AAG24113 Serpentine receptor, class t protein 3 [Caenorhabditis elegans] ref|NP_504175.2| Serpentine Receptor, class T family member (srt-3) [Caenorhabditis elegans] 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 6.5E-116
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 6.5E-116
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.0E-64
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 6.5E-116
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503668.1 7 40-62,75-97,107-129,155-177,203-225,246-268,278-295
NP_503695.1 7 40-62,75-97,107-129,155-177,203-225,246-268,278-295
C13B7.1 7 40-62,75-97,107-129,155-177,203-225,246-268,278-295
Y45G12C.5 7 40-62,75-97,107-129,155-177,203-225,246-268,278-295
SNAP00000043311 7 27-49,62-84,94-116,142-164,190-212,233-255,265-282
GENEFINDER00000043327 15 10-29,42-64,89-111,131-153,205-227,248-270,285-307,346-365,385-407,420-442,457-479,502-524,550-572,593-615,625-642
Sequence
Target Sequence 
>C. ELEGANS:189252_S_AT
gtcaattcggggttcccattagcatttatttttgggaaacggacgttcagagctgtgatg
actgcattgatgatttactgggtctatactttactattcaatgcaccgccagtgtatata
ccagaatacgcgtattactcgtttgacccaatgattgggaaggatccagcgctatatgtc
aatgtgctgcacaatataaacaacccaattgtagcaatttcaaccacgtttctatatttc
tacttgtgttattacttaattttcaagtacgggtattctacatcaatgtggttgtacaag
tctaaacggcagattattctgcaaggagttatcatttgctttttccacgccggcactgct
attatctacgagtttgtgcaatttttctacactcctcaatggctcatcctggctgggcaa
atattttggcaatggagcagtgggagcctcagcatagtatacttgtctttaaaccgatcc
attagaaattcggttatcaaaatgataattccaaagaaaaccagaattagttggggcata
catattggagccgatgagcatgtggctctggagcaagctacagctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAATTCGGGGTTCCCATTAGCAT 479 463 424 Antisense
AATGCACCGCCAGTGTATATACCAG 524 163 523 Antisense
TACGCGTATTACTCGTTTGACCCAA 244 623 550 Antisense
GGGAAGGATCCAGCGCTATATGTCA 487 493 580 Antisense
CAACCACGTTTCTATATTTCTACTT 684 185 644 Antisense
CCGGCACTGCTATTATCTACGAGTT 428 263 773 Antisense
TGTGCAATTTTTCTACACTCCTCAA 54 557 798 Antisense
GCTCATCCTGGCTGGGCAAATATTT 256 301 825 Antisense
GGAGCCTCAGCATAGTATACTTGTC 671 521 866 Antisense
ATACTTGTCTTTAAACCGATCCATT 341 23 882 Antisense
GTGGCTCTGGAGCAAGCTACAGCTG 14 491 985 Antisense
Sequence Source Affymetrix Proprietary Database