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[189251_at] Yeast YIK9 like

Description ZC518.2 /REP_DB=WormBase Gene ID /WP=CE24707 /TR=Q23368 /GB=CAA92988.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast YIK9 like
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 08      4grp_high_8_8 > 53      6grp_highest_nonorm > 50      6grp_total > 26      4grp_total > 58      6grp_highest_sub > Cu      6grp_cgc > 14      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 600.5
(3)
P 		575.1
(2.1)
P 		582.2
(2.4)
P 		426.2
(-3)
P 		174
B 433.5
(-3)
P 		612.9
(3)
P 		547.5
(0.8)
P 		475.1
(-1.6)
P 		179
C 558.3
(0.3)
P 		637.7
(2.7)
P 		646.1
(3)
P 		448.5
(-3)
P 		198
avr 530.8
(0.1) 		608.6
(3) 		591.9
(2.4) 		449.9
(-3) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 368
1 2 3 4 5 6 range
A 575.4
(2.1)
P 		615.3
(3)
P 		378.8
(-2.2)
P 		345
(-3)
P 		414.8
(-1.5)
P 		503.7
(0.5)
P 		270
B 511.3
(2.1)
P 		540.2
(3)
P 		407.9
(-1.1)
P 		447.1
(0.1)
P 		345.2
(-3)
P 		480
(1.1)
P 		195
C 713.2
(3)
P 		587.3
(0.9)
P 		502.7
(-0.5)
P 		356.5
(-3)
P 		448.7
(-1.4)
P 		463.1
(-1.2)
P 		357
avr 600
(3) 		580.9
(2.5) 		429.8
(-1.7) 		382.9
(-3) 		402.9
(-2.4) 		482.3
(-0.3) 		217
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 218.6
(3)
P 		124.8
(-0.6)
P 		152.2
(0.4)
P 		62.4
(-3)
P 		156
B 138.2
(1.4)
P 		151.4
(3)
P 		126.9
(0.1)
P 		101.2
(-3)
P 		50
C 184.8
(1.4)
P 		183.4
(1.3)
P 		225.2
(3)
P 		75.6
(-3)
P 		150
avr 180.5
(3) 		153.2
(1.4) 		168.1
(2.3) 		79.7
(-3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 106.1
(-2)
P 		218.8
(3)
P 		82.5
(-3)
P 		87.5
(-2.8)
P 		125.2
(-1.1)
P 		122.6
(-1.2)
P 		136
B 177.9
(2.9)
P 		179.8
(3)
P 		99.1
(-3)
P 		118.4
(-1.6)
P 		140.2
(0.1)
P 		179
(2.9)
P 		81
C 264.4
(3)
P 		179.2
(0.3)
P 		128
(-1.2)
P 		71.7
(-3)
P 		145.2
(-0.7)
P 		155
(-0.4)
P 		193
avr 182.8
(2.4) 		192.6
(3) 		103.2
(-2.4) 		92.5
(-3) 		136.9
(-0.3) 		152.2
(0.6) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189251_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8708
Sequence Type Exemplar sequence
Representative Public ID ZC518.2 NCBI
Target Description ZC518.2 /REP_DB=WormBase Gene ID /WP=CE24707 /TR=Q23368 /GB=CAA92988.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast YIK9 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069953(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069953 NCBI Caenorhabditis elegans yeast SEC homolog family member (sec-24.2) (sec-24.2) mRNA, complete cds. 11/11 None
SNAP00000038453 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12356254:12360738:-1 11/11 None
GENEFINDER00000038457 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12356254:12362460:-1 11/11 None
ZC518.2 ENSEMBL cdna:known chromosome:CEL140:IV:12355593:12360761:-1 gene:ZC518.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12356259-12360744(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast YIK9 like
Gene Symbol sec-24.2
Ensembl ZC518.2
Entrez Gene 178183 Entrez gene
SwissProt Q23368 EMBL-EBI
WormBase CE32286 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258829_AT protein transport protein Sec24, putative at
CANINE_2:CFAAFFX.2443.1.S1_AT similar to Protein transport protein Sec24A (SEC24-related protein A) cfa
CANINE_2:CFAAFFX.2445.1.S1_AT similar to Protein transport protein Sec24A (SEC24-related protein A) cfa
CHICKEN:GGA.11576.2.S1_A_AT SEC24 related gene family, member A (S. cerevisiae) gga
CHICKEN:GGA.11576.2.S1_S_AT SEC24 related gene family, member A (S. cerevisiae) gga
CHICKEN:GGA.17574.1.S1_S_AT SEC24 related gene family, member A (S. cerevisiae) gga
HG-U95AV2:34199_AT SEC24 related gene family, member A (S. cerevisiae) hs
HU35KSUBA:RC_AA278134_AT SEC24 related gene family, member A (S. cerevisiae) hs
HU35KSUBA:R31745_AT SEC24 related gene family, member A (S. cerevisiae) hs
HU35KSUBB:RC_T91715_F_AT SEC24 related gene family, member A (S. cerevisiae) hs
HU35KSUBD:RC_T79444_AT SEC24 related gene family, member A (S. cerevisiae) hs
HU35KSUBD:RC_H64780_F_AT SEC24 related gene family, member A (S. cerevisiae) hs
U133_X3P:HS.211612.0.S1_3P_AT SEC24 related gene family, member A (S. cerevisiae) hs
U133_X3P:HS.134218.0.A1_3P_AT SEC24 related gene family, member A (S. cerevisiae) hs
HG-U133A_2:212902_AT SEC24 related gene family, member A (S. cerevisiae) hs
HG-U133_PLUS_2:212902_AT SEC24 related gene family, member A (S. cerevisiae) hs
HG-U133A:212902_AT SEC24 related gene family, member A (S. cerevisiae) hs
HG-U133_PLUS_2:244841_AT SEC24 related gene family, member A (S. cerevisiae) hs
HG-U133B:244841_AT SEC24 related gene family, member A (S. cerevisiae) hs
HG-U95D:78591_AT SEC24 related gene family, member A (S. cerevisiae) hs
U133_X3P:HS.211612.0.S2_3P_AT SEC24 related gene family, member A (S. cerevisiae) hs
HG-U133A_2:212900_AT SEC24 related gene family, member A (S. cerevisiae) hs
HG-U133_PLUS_2:212900_AT SEC24 related gene family, member A (S. cerevisiae) hs
HG-U133A:212900_AT SEC24 related gene family, member A (S. cerevisiae) hs
MG-U74BV2:114800_AT SEC24 related gene family, member A (S. cerevisiae) mm
MOE430B:1433934_AT SEC24 related gene family, member A (S. cerevisiae) mm
MOUSE430_2:1433934_AT SEC24 related gene family, member A (S. cerevisiae) mm
MOE430B:1438121_AT SEC24 related gene family, member A (S. cerevisiae) mm
MOUSE430_2:1438121_AT SEC24 related gene family, member A (S. cerevisiae) mm
MU19KSUBC:TC41242_AT SEC24 related gene family, member A (S. cerevisiae) (Sec24a), mRNA mm
RG-U34B:RC_AA946068_AT SEC24 related gene family, member A (S. cerevisiae) (predicted) rn
RAE230A:1389383_AT SEC24 related gene family, member A (S. cerevisiae) (predicted) rn
RAT230_2:1389383_AT SEC24 related gene family, member A (S. cerevisiae) (predicted) rn
RG-U34C:RC_AI171975_AT SEC24 related gene family, member A (S. cerevisiae) (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
30127 COPII vesicle coat inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92988 Hypothetical protein ZC518.2 [Caenorhabditis elegans] ref|NP_502354.2| yeast SEC homolog family member (sec-24.2) [Caenorhabditis elegans] 0.0
blast CAE59844 Hypothetical protein CBG03317 [Caenorhabditis briggsae] 0.0
blast NP_006314 SEC24 (S. cerevisiae) homolog B [Homo sapiens] emb|CAA10335.1| Sec24B protein [Homo sapiens] sp|O95487|SC24B_HUMAN Protein transport protein Sec24B (SEC24-related protein B) 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR006895 EMBL-EBI Sec23/Sec24 zinc finger 2.0E-17
Pfam IPR007123 EMBL-EBI Gelsolin region 4.6E-13
Pfam IPR006900 EMBL-EBI Sec23/Sec24 helical domain 2.0E-38
Pfam IPR006896 EMBL-EBI Sec23/Sec24 trunk domain 9.3E-110
Pfam IPR006895 EMBL-EBI Sec23/Sec24 zinc finger 2.0E-17
Pfam IPR007123 EMBL-EBI Gelsolin region 4.6E-13
Pfam IPR006900 EMBL-EBI Sec23/Sec24 helical domain 2.0E-38
Pfam IPR006896 EMBL-EBI Sec23/Sec24 trunk domain 2.1E-88
Pfam IPR006896 EMBL-EBI Sec23/Sec24 trunk domain 1.7E-11
Sequence
Target Sequence 
>C. ELEGANS:189251_AT
ggctcttcccaagttatgtgctggctatgctcaaacatccagcattctcctcgtctcgtg
gcatccgcctagatgaacgagccggcgcaatgttgatgatgcgattcagtccattggacc
aaattctgtctgacatttatccacgtctctatcggctcaacgaactcgcctcaatgccag
aagatcagtcgccaccagcattaccactatcattcgagcatatcagtcgtggaggtgtct
atctgatgataactggtactattgcctttgtctacgtggcttcatccgcagatccaggtt
tcctggttaatgttttcggaacttctacgtataatgatattgatgagtattcccttctgg
aaagagataatgaattgtcgagaagagtgcacgcgttcttcaagcaagtcacacaattcc
gattctatctgggaccaataataacgattaaagaacactcgcctctccgtgacgtgtttg
tacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTCTTCCCAAGTTATGTGCTGGC 154 539 2519 Antisense
TGCTCAAACATCCAGCATTCTCCTC 617 579 2546 Antisense
GTCTGACATTTATCCACGTCTCTAT 627 471 2646 Antisense
TCTCTATCGGCTCAACGAACTCGCC 225 611 2664 Antisense
GAACTCGCCTCAATGCCAGAAGATC 274 349 2680 Antisense
ACCAGCATTACCACTATCATTCGAG 90 87 2712 Antisense
ATTGCCTTTGTCTACGTGGCTTCAT 493 7 2779 Antisense
CATCCGCAGATCCAGGTTTCCTGGT 110 211 2801 Antisense
GTGCACGCGTTCTTCAAGCAAGTCA 644 479 2905 Antisense
GTCACACAATTCCGATTCTATCTGG 269 465 2926 Antisense
GCCTCTCCGTGACGTGTTTGTACGG 122 283 2979 Antisense
Sequence Source Affymetrix Proprietary Database