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[189247_at] carboxyesterase

Description C23H4.2 /REP_DB=WormBase Gene ID /WP=CE26673 /TR=Q93251 /GB=CAB01677.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=carboxyesterase
Cluster 6grp_total > 75      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 53.2
(-3)
A 		105
(-0.2)
A 		63.4
(-2.4)
A 		162.7
(3)
A 		110
B 45.3
(-3)
A 		58.5
(-2.1)
A 		63.1
(-1.8)
A 		132.1
(3)
A 		87
C 14
(-3)
A 		34.8
(-2.1)
A 		56.7
(-1.1)
A 		150.9
(3)
A 		137
avr 37.5
(-3) 		66.1
(-1.5) 		61.1
(-1.7) 		148.6
(3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 33.2
(-3)
A 		55.8
(-1.5)
A 		105.2
(1.9)
A 		120.8
(3)
A 		55.3
(-1.5)
A 		90.8
(0.9)
A 		88
B 47
(-3)
A 		47.3
(-3)
A 		56
(-2.4)
A 		69.8
(-1.4)
A 		113.7
(1.7)
A 		132
(3)
P 		85
C 45.9
(-3)
A 		64.9
(-1.7)
A 		66.6
(-1.6)
A 		100.8
(0.7)
A 		74.5
(-1.1)
A 		135.8
(3)
P 		90
avr 42
(-3) 		56
(-1.9) 		75.9
(-0.4) 		97.1
(1.3) 		81.2
(0) 		119.5
(3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 19.4
(-0.7)
A 		22.8
(2.2)
A 		16.6
(-3)
A 		23.8
(3)
A 		7
B 14.4
(-3)
A 		14.4
(-3)
A 		14.6
(-2.9)
A 		28.1
(3)
A 		14
C 4.6
(-3)
A 		10
(-1.4)
A 		19.8
(1.4)
A 		25.5
(3)
A 		21
avr 12.8
(-3) 		15.7
(-1.7) 		17
(-1.1) 		25.8
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 6.1
(-3)
A 		19.8
(0.4)
A 		22.9
(1.1)
A 		30.6
(3)
A 		16.7
(-0.4)
A 		22.1
(0.9)
A 		25
B 16.4
(-2.5)
A 		15.7
(-2.6)
A 		13.6
(-3)
A 		18.5
(-2.2)
A 		46.2
(2.5)
A 		49.2
(3)
P 		36
C 17
(-3)
A 		19.8
(-2.4)
A 		17
(-3)
A 		20.3
(-2.3)
A 		24.1
(-1.5)
A 		45.4
(3)
P 		28
avr 13.2
(-3) 		18.4
(-1.8) 		17.8
(-1.9) 		23.1
(-0.7) 		29
(0.7) 		38.9
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189247_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16649
Sequence Type Exemplar sequence
Representative Public ID C23H4.2 NCBI
Target Description C23H4.2 /REP_DB=WormBase Gene ID /WP=CE26673 /TR=Q93251 /GB=CAB01677.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=carboxyesterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077636(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077636 NCBI Caenorhabditis elegans C23H4.2 (carboxyesterase) mRNA, complete cds. 11/11 None
GENEFINDER00000004848 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12219631:12233363:1 10/11 None
SNAP00000004841 ENSEMBL cdna:SNAP chromosome:CEL140:X:12220082:12225867:1 10/11 None
C23H4.2 ENSEMBL cdna:known chromosome:CEL140:X:12219631:12222612:1 gene:C23H4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12219630-12222193(+) 100.0 100.0
Public Domain and Genome References
Gene Title carboxyesterase
Ensembl C23H4.2
Entrez Gene 182818 Entrez gene
SwissProt Q93251 EMBL-EBI
WormBase CE26673 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01677 Hypothetical protein C23H4.2 [Caenorhabditis elegans] ref|NP_510037.1| C23H4.2 [Caenorhabditis elegans] 0.0
blast CAD44098 Hypothetical protein C23H4.7 [Caenorhabditis elegans] ref|NP_741910.1| C23H4.7 [Caenorhabditis elegans] 0.0
blast CAB01680 Hypothetical protein C23H4.3 [Caenorhabditis elegans] ref|NP_510038.2| C23H4.3 [Caenorhabditis elegans] 0.0
blast CAE69912 Hypothetical protein CBG16268 [Caenorhabditis briggsae] 0.0
blast CAB01678 Hypothetical protein C23H4.4 [Caenorhabditis elegans] ref|NP_510039.2| C23H4.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 5.4E-83
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 6.5E-5
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 5.4E-95
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 7.3E-83
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 6.0E-7
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 8.3E-82
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 2.3E-86
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 7.4E-7
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.9E-64
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 2.8E-68
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 6.0E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510037.1 1 548-570
C23H4.2 1 548-570
GENEFINDER00000004848 1 2144-2161
SNAP00000004841 1 936-958
Sequence
Target Sequence 
>C. ELEGANS:189247_AT
ctgggagcaccgtttatgttgttgaatggaaatattgcagacctgaagaaaaatacatcg
ccacggaatgcaatttttggaacaactgaacatgagttctttgacgtgacggagaaatat
ctttatatcacagtaactttcttagattatgaaaatccagttgctgtcgctcgaaactat
gacggacggctgatgaaaaacatggaaactatgataactggagattctgcggcaatattt
gtttctactgccacctgcgctgcagcaatggccaatgcaggagctgatgttttccttttt
gaaactcgtcaatcatacagtgttcatgtttctgacatgcaatacttcattggcaatcat
tgtgcacataaccgtacaatcgatatagacattctggatagtttttactcgaaactgctc
acgaactttacaaaacatggaaaaccgtctccagggtgggaccctgtggatcctggaaga
atgaattatttggagctgaaagttgattctaaagcaaggagcggcccagttatgcttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGGAGCACCGTTTATGTTGTTGA 262 241 862 Antisense
GAACATGAGTTCTTTGACGTGACGG 286 351 949 Antisense
AAAATCCAGTTGCTGTCGCTCGAAA 416 133 1013 Antisense
CGCTCGAAACTATGACGGACGGCTG 372 253 1029 Antisense
GCAATATTTGTTTCTACTGCCACCT 107 323 1093 Antisense
CACCTGCGCTGCAGCAATGGCCAAT 587 199 1113 Antisense
GAAACTCGTCAATCATACAGTGTTC 439 357 1162 Antisense
ACTCGAAACTGCTCACGAACTTTAC 102 97 1268 Antisense
CATGGAAAACCGTCTCCAGGGTGGG 441 207 1297 Antisense
CAGGGTGGGACCCTGTGGATCCTGG 26 209 1313 Antisense
AAGGAGCGGCCCAGTTATGCTTGAA 365 161 1377 Antisense
Sequence Source Affymetrix Proprietary Database