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[189246_at] EF hand domains

Description T04F3.4 /REP_DB=WormBase Gene ID /WP=CE06359 /TR=Q22159 /GB=CAA96671.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=EF hand domains
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 42      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 71      6grp_total > 53      4grp_total > 16      6grp_highest_sub > 03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 717
1 2 3 4 range
A 295.7
(-3)
P 		410.3
(-1.5)
P 		484
(-0.5)
P 		740.2
(3)
P 		445
B 305.3
(-3)
P 		304.7
(-3)
P 		599.9
(3)
P 		588.5
(2.8)
P 		295
C 250.9
(-3)
P 		351.6
(-2.2)
P 		320.6
(-2.4)
P 		968.3
(3)
P 		717
avr 284
(-3) 		355.5
(-2.1) 		468.2
(-0.7) 		765.7
(3) 		482

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 403
1 2 3 4 5 6 range
A 300.9
(-2.8)
P 		360.6
(-1.7)
P 		626.1
(3)
P 		318.7
(-2.5)
P 		299.2
(-2.8)
P 		290.3
(-3)
P 		336
B 276.1
(-2.9)
P 		352.1
(0.4)
P 		411.2
(3)
P 		274.5
(-3)
P 		408.1
(2.9)
P 		292.2
(-2.2)
P 		137
C 250.1
(-2.2)
P 		426.5
(3)
P 		319.6
(-0.2)
P 		306
(-0.6)
P 		340.5
(0.5)
P 		223.6
(-3)
P 		203
avr 275.7
(-2.8) 		379.7
(0.6) 		452.3
(3) 		299.7
(-2) 		349.3
(-0.4) 		268.7
(-3) 		184
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 107.7
(-0)
P 		89.1
(-3)
P 		126.5
(3)
P 		108.3
(0.1)
P 		37
B 97.4
(-0.9)
P 		75.2
(-3)
P 		139
(3)
P 		125.4
(1.7)
P 		64
C 83.1
(-3)
P 		101.1
(-1.7)
P 		111.7
(-0.9)
P 		163.3
(3)
P 		80
avr 96.1
(-2) 		88.5
(-3) 		125.7
(2.1) 		132.3
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 55.5
(-3)
P 		128.2
(2.4)
P 		136.3
(3)
P 		80.8
(-1.1)
P 		90.3
(-0.4)
P 		70.7
(-1.9)
P 		81
B 96.1
(-1.5)
P 		117.2
(-0.1)
P 		99.9
(-1.2)
P 		72.7
(-3)
P 		165.8
(3)
P 		109
(-0.7)
P 		93
C 92.7
(-0.3)
P 		130.1
(3)
P 		81.3
(-1.3)
P 		61.5
(-3)
P 		110.2
(1.3)
P 		74.9
(-1.8)
P 		69
avr 81.4
(-1.9) 		125.2
(3) 		105.8
(0.8) 		71.7
(-3) 		122.1
(2.7) 		84.9
(-1.5) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189246_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14612
Sequence Type Exemplar sequence
Representative Public ID T04F3.4 NCBI
Target Description T04F3.4 /REP_DB=WormBase Gene ID /WP=CE06359 /TR=Q22159 /GB=CAA96671.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=EF hand domains
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073565
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T04F3.4 ENSEMBL cdna:known chromosome:CEL140:V:11764552:11765585:-1 gene:T04F3.4 None
SNAP00000035120 ENSEMBL cdna:SNAP chromosome:CEL140:V:11764552:11765585:-1 None
GENEFINDER00000035124 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11764552:11764883:-1 None
NM_073565 NCBI Caenorhabditis elegans T04F3.4 (T04F3.4) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11764551-11765292(-) 72.9 100.0
Public Domain and Genome References
Gene Title EF hand domains
Ensembl T04F3.4
Entrez Gene 188064 Entrez gene
SwissProt Q22159 EMBL-EBI
WormBase CE28952 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA96671 Hypothetical protein T04F3.4 [Caenorhabditis elegans] ref|NP_505966.1| T04F3.4 [Caenorhabditis elegans] 9.0E-69
blast CAA96671 Hypothetical protein T04F3.4 [Caenorhabditis elegans] ref|NP_505966.1| T04F3.4 [Caenorhabditis elegans] 6.0E-50
blast CAE75303 Hypothetical protein CBG23273 [Caenorhabditis briggsae] 3.0E-44
blast CAE75303 Hypothetical protein CBG23273 [Caenorhabditis briggsae] 6.0E-38
blast CAA96655 Hypothetical protein F55A11.1 [Caenorhabditis elegans] ref|NP_505967.1| F55A11.1 [Caenorhabditis elegans] 4.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.35
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.022
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.35
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.022
Sequence
Target Sequence 
>C. ELEGANS:189246_AT
atgtgtgcctctaatgaggactgtaattttttaatttcatcgatctttcattgttggtac
actatttttcaaaatttatatgatttaattgatttttttattttgaaaaaattaactaaa
gcatttgagcaaaaatctattaaaaaaagcgctacaacaacaaaagttactgtactcttt
aaaggcgcacatccgttagaagttatagttagtttttctcgaaaagaacatatcaaacaa
catttggaaaataaaatcgaagttgagaagctaacagaagaacaacaacggttccattat
ttctcaatgcatgatttgaataaggacaattttattgatggaattgaaattttgaaggct
cttactcacactcatgatgcacacgattccggacatcctgttccagtatcagatgaagca
gaaacagagagacttgttgatgctgttttggatgatttggatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGTGCCTCTAATGAGGACTGTA 202 49 13 Antisense
ATTTTTTAATTTCATCGATCTTTCA 133 15 38 Antisense
ATCGATCTTTCATTGTTGGTACACT 438 35 51 Antisense
AAGGCGCACATCCGTTAGAAGTTAT 662 161 194 Antisense
AACAACGGTTCCATTATTTCTCAAT 454 129 296 Antisense
TTTTGAAGGCTCTTACTCACACTCA 656 677 362 Antisense
CTTACTCACACTCATGATGCACACG 159 223 373 Antisense
TGATGCACACGATTCCGGACATCCT 189 567 387 Antisense
CGGACATCCTGTTCCAGTATCAGAT 373 243 402 Antisense
GAGAGACTTGTTGATGCTGTTTTGG 246 395 439 Antisense
GATGCTGTTTTGGATGATTTGGATT 99 415 451 Antisense
Sequence Source Affymetrix Proprietary Database