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[189244_at] G-beta-repeats

Description F38G1.1 /REP_DB=WormBase Gene ID /WP=CE25876 /GEN=che-2 /GB=AAK68383.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-beta-repeats
Cluster 6grp_total > 07      4grp_total > 22      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 87.6
(3)
P 		55.3
(-1.4)
A 		43.7
(-3)
A 		71.6
(0.8)
A 		44
B 115.3
(3)
P 		64.1
(-1)
A 		37.6
(-3)
A 		100.8
(1.9)
P 		78
C 146.6
(3)
P 		39
(-3)
A 		41.4
(-2.9)
A 		128.8
(2)
P 		108
avr 116.5
(3) 		52.8
(-2.1) 		40.9
(-3) 		100.4
(1.7) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 75.4
(3)
A 		44.8
(-2.4)
A 		47
(-2)
A 		42.9
(-2.8)
A 		41.6
(-3)
A 		54.9
(-0.6)
A 		34
B 97.9
(3)
P 		34.1
(-3)
A 		68.9
(0.3)
A 		42.5
(-2.2)
A 		48
(-1.7)
P 		34.9
(-2.9)
A 		64
C 39.2
(-1.4)
A 		72.8
(3)
P 		26.7
(-3)
A 		51
(0.2)
A 		44
(-0.7)
A 		33.2
(-2.2)
A 		46
avr 70.8
(3) 		50.6
(-1.1) 		47.5
(-1.7) 		45.5
(-2.1) 		44.5
(-2.3) 		41
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 31.9
(3)
P 		12
(-2.6)
A 		11.4
(-2.7)
A 		10.5
(-3)
A 		21
B 36.8
(3)
P 		15.8
(-1.5)
A 		8.7
(-3)
A 		21.5
(-0.3)
P 		28
C 48.5
(3)
P 		11.2
(-3)
A 		14.4
(-2.5)
A 		21.7
(-1.3)
P 		37
avr 39.1
(3) 		13
(-2.7) 		11.5
(-3) 		17.9
(-1.6) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 13.9
(0.9)
A 		15.9
(3)
A 		10.2
(-3)
A 		10.9
(-2.3)
A 		12.6
(-0.5)
A 		13.4
(0.4)
A 		6
B 34.1
(3)
P 		11.3
(-3)
A 		16.7
(-1.6)
A 		11.3
(-3)
A 		19.5
(-0.8)
P 		13
(-2.6)
A 		23
C 14.5
(0)
A 		22.2
(3)
P 		6.8
(-3)
A 		10.3
(-1.6)
A 		14.2
(-0.1)
A 		11.1
(-1.3)
A 		15
avr 20.8
(3) 		16.5
(0.4) 		11.2
(-2.8) 		10.8
(-3) 		15.4
(-0.2) 		12.5
(-2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189244_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18216
Sequence Type Exemplar sequence
Representative Public ID F38G1.1 NCBI
Target Description F38G1.1 /REP_DB=WormBase Gene ID /WP=CE25876 /GEN=che-2 /GB=AAK68383.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-beta-repeats
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075705(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075705 NCBI Caenorhabditis elegans F38G1.1 (G-beta-repeats) mRNA, complete cds. 11/11 None
GENEFINDER00000040085 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:478975:486434:1 11/11 None
SNAP00000040082 ENSEMBL cdna:SNAP chromosome:CEL140:X:482954:486434:1 10/11 None
F38G1.1.1 ENSEMBL cdna:known chromosome:CEL140:X:481379:486492:1 gene:F38G1.1 11/11 None
F38G1.1.2 ENSEMBL cdna:known chromosome:CEL140:X:481451:486503:1 gene:F38G1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:481451-486434(+) 100.0 100.0
Public Domain and Genome References
Gene Title G-beta-repeats
Gene Symbol che-2
Ensembl F38G1.1
Entrez Gene 180401 Entrez gene
SwissProt Q9XZP7 EMBL-EBI
WormBase CE25876 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.21960.1.S1_S_AT similar to WD repeat domain 56 cfa
DROSOPHILA_2:1640383_AT dm
DROSGENOME1:146554_AT dm
CHICKEN:GGA.10100.1.S1_AT WD repeat domain 56 gga
HG-U133_PLUS_2:226098_AT WD repeat domain 56 hs
HG-U133B:226098_AT WD repeat domain 56 hs
HU35KSUBC:RC_AA400198_AT WD repeat domain 56 hs
HU35KSUBC:RC_AA262622_AT WD repeat domain 56 hs
HU35KSUBD:RC_R41798_S_AT WD repeat domain 56 hs
U133_X3P:HS2.407402.1.A1_3P_S_AT WD repeat domain 56 hs
U133_X3P:HS2.375717.1.S1_3P_AT WD repeat domain 56 hs
U133_X3P:HS.186547.0.A1_3P_AT WD repeat domain 56 hs
HG-U133_PLUS_2:1558956_S_AT WD repeat domain 56 hs
HG-U133_PLUS_2:1564231_AT WD repeat domain 56 hs
HG-U95B:49323_AT WD repeat domain 56 hs
HG-U95D:70793_AT WD repeat domain 56 hs
HG-U95E:78135_AT WD repeat domain 56 hs
MOE430A:1428329_A_AT WD repeat domain 56 mm
MOUSE430A_2:1428329_A_AT WD repeat domain 56 mm
MOUSE430_2:1428329_A_AT WD repeat domain 56 mm
MOUSE430_2:1427568_A_AT WD repeat domain 56 mm
MOUSE430A_2:1427568_A_AT WD repeat domain 56 mm
MOE430A:1427568_A_AT WD repeat domain 56 mm
MG-U74BV2:111105_AT WD repeat domain 56 mm
MG-U74BV2:163499_AT WD repeat domain 56 mm
MG-U74CV2:166502_AT WD repeat domain 56 mm
MG-U74BV2:115332_AT WD repeat domain 56, mRNA (cDNA clone MGC:31523 IMAGE:4501451) mm
MU19KSUBA:TC15668_AT WD repeat domain 56, mRNA (cDNA clone MGC:31523 IMAGE:4501451) mm
MU19KSUBA:TC21816_AT WD repeat domain 56, mRNA (cDNA clone MGC:31523 IMAGE:4501451) mm
MU19KSUBB:TC34785_AT WD repeat domain 56, mRNA (cDNA clone MGC:31523 IMAGE:4501451) mm
RG-U34B:RC_AA851404_AT similar to RIKEN cDNA 4921524P20 (predicted) rn
RAE230B:1391501_AT similar to RIKEN cDNA 4921524P20 (predicted) rn
RAT230_2:1391501_AT similar to RIKEN cDNA 4921524P20 (predicted) rn
RAE230B:1390872_AT Similar to RIKEN cDNA 4921524P20 (predicted) rn
RAT230_2:1390872_AT Similar to RIKEN cDNA 4921524P20 (predicted) rn
RG-U34C:RC_AI178134_AT Similar to RIKEN cDNA 4921524P20 (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5929 cilium inferred from direct assay QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68383 Abnormal chemotaxis protein 2 [Caenorhabditis elegans] ref|NP_508106.1| F38G1.1 [Caenorhabditis elegans] emb|CAB38019.1| CHE-2 protein [Caenorhabditis elegans] 0.0
blast CAE68030 Hypothetical protein CBG13647 [Caenorhabditis briggsae] 0.0
blast NP_001017193 WD repeat domain 56 [Xenopus tropicalis] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.1E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.0E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.2E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.3
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.1E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.0E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.2E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.3
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.0E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.2E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.3
Sequence
Target Sequence 
>C. ELEGANS:189244_AT
atcggcagcgtcggaaaatttccacagttggctaattttgccggaaatacaatagttatc
aggaaatcagatggatgtttactgccaactgggattcttccgttctatggaacactcatc
acaatggcatctcaatcaaaatgggatcaagcaatacgactatgcagaagtattggaaat
gacacaatgtgggcgacttttgctggattagctgttctccacaaaaatatgatcgttatg
gaaattgcctatgcagcattggaggatgatgaaaaagtttccctgatcaacgaaatcaaa
gacaaaaccgataaagagactcgtcaagctatgcaagtggtattaactggaaagctcgca
gatgctgatgtcttgctagaaagaagtggactaagctttcgctcgcttatgttgaatata
caaatgttcaagtggaaaagagcactcgaacttggcttgaaaaataaacagtggctcgaa
attgtaatgggatatcgtgagaaatacttgaagaactgtggacaaaaagagacagaccct
ctttttttaaagcacatgtcagaggtcgaaatcgactgggtgcatatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGGCAGCGTCGGAAAATTTCCAC 79 35 1666 Antisense
TGCCAACTGGGATTCTTCCGTTCTA 399 587 1748 Antisense
CACTCATCACAATGGCATCTCAATC 15 199 1778 Antisense
CAATGTGGGCGACTTTTGCTGGATT 656 181 1850 Antisense
TTGCTGGATTAGCTGTTCTCCACAA 547 703 1865 Antisense
GAGACTCGTCAAGCTATGCAAGTGG 113 393 1981 Antisense
GCTCGCAGATGCTGATGTCTTGCTA 550 297 2019 Antisense
AGAAGTGGACTAAGCTTTCGCTCGC 284 75 2047 Antisense
AGCTTTCGCTCGCTTATGTTGAATA 340 79 2059 Antisense
AAGAGCACTCGAACTTGGCTTGAAA 157 155 2103 Antisense
GTCGAAATCGACTGGGTGCATATAC 153 475 2230 Antisense
Sequence Source Affymetrix Proprietary Database