[Home] | [Total List]

[189242_at] 7TM chemoreceptor, sri family

Description F34D6.5 /REP_DB=WormBase Gene ID /WP=CE25869 /GEN=sri-62 /GB=AAK68370.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 39      4grp_total > 54      6grp_cgc > 19      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 44.6
(3)
A 		13.3
(-1.5)
A 		32.2
(1.2)
A 		3.3
(-3)
A 		41
B 30.8
(3)
A 		26.7
(2.1)
A 		3.8
(-2.8)
A 		2.8
(-3)
A 		28
C 26
(3)
A 		5.9
(-3)
A 		6.6
(-2.8)
A 		12.3
(-1.1)
A 		20
avr 33.8
(3) 		15.3
(-1) 		14.2
(-1.2) 		6.1
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 16.5
(-1.8)
A 		43.8
(0.9)
A 		32
(-0.3)
A 		4.8
(-3)
A 		57.8
(2.3)
A 		65.3
(3)
A 		61
B 40.8
(3)
A 		33.7
(1.8)
A 		6.6
(-3)
A 		13.8
(-1.7)
A 		35.2
(2)
A 		36.9
(2.3)
A 		34
C 40.2
(1.6)
A 		51
(3)
A 		35.7
(1)
A 		10.9
(-2.2)
A 		4.9
(-3)
A 		21.2
(-0.9)
A 		46
avr 32.5
(1.1) 		42.8
(3) 		24.8
(-0.3) 		9.8
(-3) 		32.6
(1.1) 		41.1
(2.7) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.2
(3)
A 		2.9
(-2.1)
A 		8.4
(0)
A 		0.5
(-3)
A 		16
B 9.8
(3)
A 		6.6
(0.9)
A 		0.9
(-2.8)
A 		0.6
(-3)
A 		9
C 8.6
(3)
A 		1.7
(-3)
A 		2.3
(-2.5)
A 		2.1
(-2.7)
A 		7
avr 11.5
(3) 		3.7
(-1.5) 		3.9
(-1.4) 		1.1
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3
(-2.3)
A 		15.6
(2.3)
A 		7
(-0.9)
A 		1.2
(-3)
A 		17.5
(3)
A 		15.9
(2.4)
A 		16
B 14.2
(3)
A 		11.2
(1.5)
A 		1.6
(-3)
A 		3.7
(-2)
A 		14.3
(3)
A 		13.8
(2.8)
A 		13
C 14.9
(2.7)
A 		15.6
(3)
A 		9.1
(0.2)
A 		2.2
(-2.7)
A 		1.6
(-3)
A 		7.1
(-0.6)
A 		14
avr 10.7
(1.3) 		14.1
(3) 		5.9
(-1.2) 		2.4
(-3) 		11.1
(1.5) 		12.3
(2.1) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189242_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4177
Sequence Type Exemplar sequence
Representative Public ID F34D6.5 NCBI
Target Description F34D6.5 /REP_DB=WormBase Gene ID /WP=CE25869 /GEN=sri-62 /GB=AAK68370.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061934(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061934 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-62) (sri-62) mRNA, complete cds. 11/11 None
SNAP00000016793 ENSEMBL cdna:SNAP chromosome:CEL140:II:2697062:2697803:-1 10/11 None
F34D6.5 ENSEMBL cdna:known chromosome:CEL140:II:2696939:2698478:-1 gene:F34D6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2696937-2698477(-) 99.4 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-62
Ensembl F34D6.5
Entrez Gene 191926 Entrez gene
SwissProt Q965L7 EMBL-EBI
WormBase CE25869 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68370 Serpentine receptor, class i protein 62 [Caenorhabditis elegans] ref|NP_494335.1| Serpentine Receptor, class I family member (sri-62) [Caenorhabditis elegans] 1.0E-173
blast T33560 hypothetical protein F34D6.5 - Caenorhabditis elegans 1.0E-173
blast CAE63429 Hypothetical protein CBG07875 [Caenorhabditis briggsae] 1.0E-136
blast AAK68370 Serpentine receptor, class i protein 62 [Caenorhabditis elegans] ref|NP_494335.1| Serpentine Receptor, class I family member (sri-62) [Caenorhabditis elegans] 1.0E-91
blast T33560 hypothetical protein F34D6.5 - Caenorhabditis elegans 1.0E-91
blast CAE63429 Hypothetical protein CBG07875 [Caenorhabditis briggsae] 6.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.8E-27
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.6E-79
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494335.1 7 13-35,47-66,81-103,131-153,195-217,238-267,272-294
F34D6.5 7 13-35,47-66,81-103,131-153,195-217,238-267,272-294
SNAP00000016793 4 24-46,115-137,158-187,192-214
Sequence
Target Sequence 
>C. ELEGANS:189242_AT
ttaatgccacgctggctcatttggtgtttattttcatttttcgcgtttgatatttgtgtg
gtggtcgggttattctcgcaaacttgtatagatcaggacctgcaaatggagtatgttaga
gtgaacttcccagactacctccccggcttccaaagccttccaaatttctccatctatgaa
gccgacgcatttttcgttggaacagtggtcttcgcagtgacctgtggaatcatctcattt
ttcattttatgcatcatcctggctaatatattccgaatgctttcactattgaaatctcaa
atctctgcctcaaactatcgaaaacatcgagccgccatctggagcctcctggctcaattt
gccacgtcatccgtctgcgtggtaccgcccatctttttcgtgttcgttgtgctgataggg
attgatggagcgcaggtaatcgtcgagtttctgctagtcattgcctgcttgcactcctcc
ttcaacgtgaccgtactagttttcacgttcccgccgtatcggaaatatgtgttctctttg
atcaagcgggaaaaaagaatagagagaatcggtgtgtcggtgctatccttgaagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAATGCCACGCTGGCTCATTTGGT 408 683 391 Antisense
TGTGGTGGTCGGGTTATTCTCGCAA 687 553 447 Antisense
TTAGAGTGAACTTCCCAGACTACCT 7 679 506 Antisense
ATTTCTCCATCTATGAAGCCGACGC 91 15 554 Antisense
GAAGCCGACGCATTTTTCGTTGGAA 38 345 568 Antisense
ACAGTGGTCTTCGCAGTGACCTGTG 215 107 592 Antisense
TTCATTTTATGCATCATCCTGGCTA 276 689 631 Antisense
CCACGTCATCCGTCTGCGTGGTACC 320 275 752 Antisense
CGAGTTTCTGCTAGTCATTGCCTGC 48 251 834 Antisense
CTCCTTCAACGTGACCGTACTAGTT 600 231 867 Antisense
GTGTGTCGGTGCTATCCTTGAAGCC 173 487 962 Antisense
Sequence Source Affymetrix Proprietary Database