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[189240_at] peroxidase like

Description F09F3.5 /REP_DB=WormBase Gene ID /WP=CE20661 /TR=P90820 /GB=CAB02910.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=peroxidase like
Cluster 6grp_total > 81      4grp_total > 25      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 22.4
(-3)
A 		49.1
(-1.3)
A 		41.8
(-1.7)
A 		114.8
(3)
M 		92
B 5.4
(-3)
A 		25.3
(2.2)
A 		25
(2.1)
A 		28.3
(3)
A 		23
C 23.3
(-3)
A 		51.9
(3)
A 		24.1
(-2.8)
A 		33.5
(-0.9)
A 		29
avr 17
(-3) 		42.1
(0.6) 		30.3
(-1.1) 		58.9
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 24.5
(-3)
A 		31.4
(-2.8)
A 		59.5
(-1.8)
A 		198.1
(3)
P 		186.5
(2.6)
P 		24.4
(-3)
A 		174
B 20.2
(-2.7)
A 		8.6
(-3)
A 		30.1
(-2.5)
P 		244.9
(3)
P 		196
(1.8)
P 		48.5
(-2)
A 		236
C 44.7
(-2.5)
A 		49.1
(-2.4)
A 		23.7
(-3)
A 		291.7
(3)
P 		170.2
(0.3)
P 		53.9
(-2.3)
A 		268
avr 29.8
(-3) 		29.7
(-3) 		37.8
(-2.8) 		244.9
(3) 		184.2
(1.3) 		42.3
(-2.6) 		215
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 8.1
(-3)
A 		10.7
(-1.2)
A 		10.9
(-1.1)
A 		16.8
(3)
M 		9
B 1.7
(-3)
A 		6.3
(3)
A 		5.8
(2.3)
A 		6
(2.6)
A 		5
C 7.7
(-1.6)
A 		14.9
(3)
A 		8.4
(-1.2)
A 		5.6
(-3)
A 		9
avr 5.8
(-3) 		10.6
(3) 		8.4
(0.3) 		9.5
(1.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 4.5
(-3)
A 		11.2
(-2.2)
A 		13
(-2)
A 		50.2
(2.3)
P 		56.3
(3)
P 		5.9
(-2.8)
A 		52
B 7
(-2.7)
A 		2.9
(-3)
A 		7.3
(-2.7)
P 		64.9
(1.9)
P 		79.6
(3)
P 		18.1
(-1.8)
A 		77
C 16.6
(-1.8)
A 		15
(-2)
A 		6
(-3)
A 		58.7
(3)
P 		55.1
(2.6)
P 		18
(-1.6)
A 		53
avr 9.4
(-2.9) 		9.7
(-2.9) 		8.8
(-3) 		57.9
(2.4) 		63.7
(3) 		14
(-2.4) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189240_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14733
Sequence Type Exemplar sequence
Representative Public ID F09F3.5 NCBI
Target Description F09F3.5 /REP_DB=WormBase Gene ID /WP=CE20661 /TR=P90820 /GB=CAB02910.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=peroxidase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074031(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074031 NCBI Caenorhabditis elegans F09F3.5 (F09F3.5) mRNA, complete cds. 11/11 None
SNAP00000022392 ENSEMBL cdna:SNAP chromosome:CEL140:V:13853088:13855772:1 11/11 None
GENEFINDER00000022407 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13851613:13855772:1 11/11 None
F09F3.5 ENSEMBL cdna:known chromosome:CEL140:V:13853088:13855788:1 gene:F09F3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13853087-13855772(+) 100.0 100.0
Public Domain and Genome References
Gene Title peroxidase like
Ensembl F09F3.5
Entrez Gene 179880 Entrez gene
SwissProt P90820 EMBL-EBI
WormBase CE20661 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4601 peroxidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02910 Hypothetical protein F09F3.5 [Caenorhabditis elegans] ref|NP_506432.1| F09F3.5 [Caenorhabditis elegans] 0.0
blast CAE66225 Hypothetical protein CBG11467 [Caenorhabditis briggsae] 0.0
blast CAE65447 Hypothetical protein CBG10411 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000022407 3 7-29,56-78,131-153
Sequence
Target Sequence 
>C. ELEGANS:189240_AT
gaacggcatggttcgtatgcccgctatgaagtccgatcgttatttttcatttggaatcag
aaatcaaatgtttgaaattcgcggtagaaatgggtctggagtggatttggtttcaattaa
tattcaaagaggaagagatatgggtctgttcccttacattcaatacagacaactcgttgg
tcttccaaccgtcactagtttcaatgagctaaacaccacattctctcaagaaaatattca
agcattgagaaatgtgtattctgatccagctgatatcgatttgtatgtgggaattatgct
cgaggaaccactgtctggtggacagcttggtccaacagcttcatttatgattggagagca
attcagagcattgaagagaggagatagatttttctatgaaagtatcgcagagggcactga
taactttacacaagaagaaatcagtgagcttcgaaacaaaacttcattggcaaaaattat
ctgcactaacatggactttgctgctagaatcaatacagatattttcgatcaccgaagcag
acaagtggcatgcacttctcttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGGCATGGTTCGTATGCCCGCT 334 349 1575 Antisense
CGTATGCCCGCTATGAAGTCCGATC 129 247 1588 Antisense
AAGTCCGATCGTTATTTTTCATTTG 28 157 1603 Antisense
GATATGGGTCTGTTCCCTTACATTC 466 425 1711 Antisense
ACAGACAACTCGTTGGTCTTCCAAC 658 107 1739 Antisense
TCTTCCAACCGTCACTAGTTTCAAT 2 611 1755 Antisense
GCTAAACACCACATTCTCTCAAGAA 479 301 1782 Antisense
TTATGCTCGAGGAACCACTGTCTGG 643 679 1868 Antisense
GGACAGCTTGGTCCAACAGCTTCAT 216 525 1894 Antisense
GCACTAACATGGACTTTGCTGCTAG 146 317 2057 Antisense
GACAAGTGGCATGCACTTCTCTTCC 400 365 2114 Antisense
Sequence Source Affymetrix Proprietary Database