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[189239_at] EGF-like domain

Description F19C6.3 /REP_DB=WormBase Gene ID /WP=CE01556 /TR=Q09538 /GB=CAA88048.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=EGF-like domain
Cluster 6grp_total > 15      4grp_total > 30      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 186.6
(3)
P 		112
(-0.2)
A 		45.4
(-3)
A 		139.1
(1)
A 		141
B 203.7
(3)
A 		67
(-2.5)
A 		54.9
(-3)
A 		103.2
(-1.1)
M 		149
C 224.2
(3)
P 		122
(-0.9)
A 		65.7
(-3)
A 		152.5
(0.3)
A 		159
avr 204.8
(3) 		100.3
(-1.2) 		55.3
(-3) 		131.6
(0.1) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 167.8
(3)
A 		153
(2.4)
A 		119.9
(1)
A 		98.7
(0.1)
P 		100.4
(0.2)
A 		25.8
(-3)
A 		142
B 157.7
(2.5)
P 		167.5
(3)
M 		139.5
(1.5)
A 		80.7
(-1.6)
A 		92.6
(-1)
P 		55.3
(-3)
A 		112
C 183.4
(2.2)
P 		204.6
(3)
M 		89.7
(-1.5)
A 		53.8
(-2.9)
A 		63.5
(-2.5)
A 		51.2
(-3)
A 		153
avr 169.6
(2.8) 		175
(3) 		116.4
(0.3) 		77.7
(-1.5) 		85.5
(-1.1) 		44.1
(-3) 		131
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 68
(3)
P 		24.3
(-1.7)
A 		11.9
(-3)
A 		20.4
(-2.1)
A 		56
B 65
(3)
A 		16.5
(-2.6)
A 		12.7
(-3)
A 		22
(-1.9)
M 		52
C 74.2
(3)
P 		35.1
(-1.6)
A 		22.9
(-3)
A 		25.7
(-2.7)
A 		51
avr 69.1
(3) 		25.3
(-1.9) 		15.8
(-3) 		22.7
(-2.2) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 30.9
(0.1)
A 		54.4
(3)
A 		26.1
(-0.5)
A 		25
(-0.7)
P 		30.3
(-0)
A 		6.3
(-3)
A 		48
B 54.9
(2.9)
P 		55.7
(3)
M 		33.9
(-0.7)
A 		21.4
(-2.9)
A 		37.6
(-0.1)
P 		20.6
(-3)
A 		35
C 68
(3)
P 		62.4
(2.4)
M 		22.8
(-1.7)
A 		10.8
(-3)
A 		20.5
(-2)
A 		17.1
(-2.3)
A 		57
avr 51.3
(2.1) 		57.5
(3) 		27.6
(-1.2) 		19.1
(-2.4) 		29.5
(-0.9) 		14.7
(-3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189239_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16908
Sequence Type Exemplar sequence
Representative Public ID F19C6.3 NCBI
Target Description F19C6.3 /REP_DB=WormBase Gene ID /WP=CE01556 /TR=Q09538 /GB=CAA88048.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=EGF-like domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077278(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077278 NCBI Caenorhabditis elegans F19C6.3 (F19C6.3) mRNA, complete cds. 11/11 None
GENEFINDER00000036256 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10005806:10008685:-1 11/11 None
F19C6.3 ENSEMBL cdna:known chromosome:CEL140:X:10005806:10008685:-1 gene:F19C6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036253 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10005805-10008685(-) 100.0 100.0
Public Domain and Genome References
Gene Title EGF-like domain
Ensembl F19C6.3
Entrez Gene 184675 Entrez gene
SwissProt Q09538 EMBL-EBI
WormBase CE01556 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88048 Hypothetical protein F19C6.3 [Caenorhabditis elegans] ref|NP_509679.1| F19C6.3 [Caenorhabditis elegans] 0.0
blast CAE58753 Hypothetical protein CBG01945 [Caenorhabditis briggsae] 0.0
blast XP_395215 PREDICTED: similar to ENSANGP00000016117 [Apis mellifera] 1.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 6.0E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 4.3E-5
Sequence
Target Sequence 
>C. ELEGANS:189239_AT
agcagtggattgtccagctgtcacctgcacccatccgatgatacgaaaagatgattgttg
cccgagttgtggtgaacagtgtttttacgaaagtcacaaaattgcaaaccctcatggaga
agttttctggccaggagactgctacaggtgtcaatgttgggataaaaaagttcactgttc
atccgaatatgcaacatgtgagcctccgagttgtccggaagaagattgggtttacaatga
aaaattcaattgctgcccaaaatgtcgcgattttgcacgtttctgtgcagtgaaaccgtg
tcacaaatacgctacatgcacagattcaaaacgtgggccaaaatgctcatgcgacacggg
cttccaaggaaatggcacgtattgcgaagacattgacgagtgctccttctcgcaagacgc
caaggaacagcttggcggctgtctctcaggttcaacctgtcgaaacgtaccaggaagtta
caaatgcgactgtctgcctggttatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGTGGATTGTCCAGCTGTCACC 23 79 753 Antisense
GATTGTTGCCCGAGTTGTGGTGAAC 71 435 805 Antisense
GTTTTCTGGCCAGGAGACTGCTACA 658 447 874 Antisense
AAGTTCACTGTTCATCCGAATATGC 245 157 920 Antisense
ATATGCAACATGTGAGCCTCCGAGT 366 21 939 Antisense
AATTGCTGCCCAAAATGTCGCGATT 157 179 1000 Antisense
GTCGCGATTTTGCACGTTTCTGTGC 436 475 1016 Antisense
AAAATGCTCATGCGACACGGGCTTC 531 131 1092 Antisense
AGGAACAGCTTGGCGGCTGTCTCTC 467 55 1175 Antisense
GGTTCAACCTGTCGAAACGTACCAG 375 503 1201 Antisense
AAATGCGACTGTCTGCCTGGTTATC 657 117 1234 Antisense
Sequence Source Affymetrix Proprietary Database