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[189237_at] ankyrin repeats

Description C11E4.6 /REP_DB=WormBase Gene ID /WP=CE08106 /TR=Q93203 /GB=CAB02658.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=ankyrin repeats
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 57      4grp_high_8_8 > 41      6grp_highest_nonorm > 70      6grp_total > 03      4grp_total > 46      6grp_highest_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 235
1 2 3 4 range
A 385
(3)
P 		276.7
(0)
P 		167.6
(-3)
P 		174.9
(-2.8)
P 		217
B 387.1
(3)
P 		257.9
(-0.7)
P 		210.4
(-2.1)
P 		178.3
(-3)
P 		209
C 403
(3)
P 		242
(-1.3)
P 		239.6
(-1.4)
P 		179
(-3)
P 		224
avr 391.7
(3) 		258.9
(-0.7) 		205.9
(-2.2) 		177.4
(-3) 		214

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 309.6
(2.2)
P 		327.9
(3)
P 		195.6
(-3)
P 		258.7
(-0.1)
P 		228.7
(-1.5)
P 		202.6
(-2.7)
P 		132
B 301.9
(2.5)
P 		306.2
(2.6)
P 		258.1
(0.8)
P 		315.9
(3)
P 		227.9
(-0.4)
P 		160.3
(-3)
P 		156
C 346.5
(3)
P 		315.3
(1.6)
P 		268.5
(-0.4)
P 		210.4
(-3)
P 		236.9
(-1.8)
P 		216.8
(-2.7)
P 		136
avr 319.3
(3) 		316.5
(2.9) 		240.7
(-0.7) 		261.7
(0.3) 		231.2
(-1.2) 		193.2
(-3) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 140.2
(3)
P 		60.1
(-1.2)
P 		43.8
(-2)
P 		25.6
(-3)
P 		115
B 123.5
(3)
P 		63.7
(-1.2)
P 		48.7
(-2.2)
P 		38
(-3)
P 		86
C 133.4
(3)
P 		69.6
(-0.7)
P 		83.5
(0.1)
P 		30.2
(-3)
P 		103
avr 132.4
(3) 		64.5
(-1) 		58.7
(-1.4) 		31.3
(-3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 57.1
(-1.8)
P 		116.6
(3)
P 		42.6
(-3)
P 		65.6
(-1.1)
P 		69
(-0.9)
P 		49.3
(-2.5)
P 		74
B 105
(3)
P 		101.9
(2.6)
P 		62.7
(-2.6)
P 		83.7
(0.2)
P 		92.6
(1.4)
P 		59.8
(-3)
P 		45
C 128.4
(3)
P 		96.2
(0.8)
P 		68.3
(-1.2)
P 		42.3
(-3)
P 		76.6
(-0.6)
P 		72.6
(-0.9)
P 		86
avr 96.8
(2) 		104.9
(3) 		57.9
(-3) 		63.9
(-2.2) 		79.4
(-0.3) 		60.6
(-2.7) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189237_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16417
Sequence Type Exemplar sequence
Representative Public ID C11E4.6 NCBI
Target Description C11E4.6 /REP_DB=WormBase Gene ID /WP=CE08106 /TR=Q93203 /GB=CAB02658.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=ankyrin repeats
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077219(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077219 NCBI Caenorhabditis elegans C11E4.6 (C11E4.6) mRNA, complete cds. 11/11 None
SNAP00000031377 ENSEMBL cdna:SNAP chromosome:CEL140:X:9610508:9616524:1 11/11 None
GENEFINDER00000031383 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9610508:9616823:1 11/11 None
C11E4.6 ENSEMBL cdna:known chromosome:CEL140:X:9610495:9616956:1 gene:C11E4.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9610507-9616524(+) 100.0 100.0
Public Domain and Genome References
Gene Title ankyrin repeats
Ensembl C11E4.6
Entrez Gene 181179 Entrez gene
SwissProt Q93203 EMBL-EBI
WormBase CE31411 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02658 Hypothetical protein C11E4.6 [Caenorhabditis elegans] ref|NP_509620.2| C11E4.6 [Caenorhabditis elegans] 0.0
blast CAE69786 Hypothetical protein CBG16074 [Caenorhabditis briggsae] 0.0
blast AAF56132 CG4393-PA [Drosophila melanogaster] ref|NP_651143.1| CG4393-PA [Drosophila melanogaster] 1.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 0.15
Pfam IPR002110 EMBL-EBI Ankyrin 0.0012
Pfam IPR002110 EMBL-EBI Ankyrin 1.4E-8
Pfam IPR002110 EMBL-EBI Ankyrin 2.4E-4
Pfam IPR002110 EMBL-EBI Ankyrin 4.1E-6
Pfam IPR006020 EMBL-EBI Phosphotyrosine interaction domain 2.1E-6
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 3.0E-15
Sequence
Target Sequence 
>C. ELEGANS:189237_AT
tacatttccaactttgtcggtgcaggatacaagcatatggcaaaattgacagaaattgac
tgggacacggcaagattgatgcaactcggtgttactcgtcctggtcacattgctagaatg
ctccattcgttcaaaaaagcagaagacgaaaaaagaaaagagtacaataatcgactacag
attaagccattaatgtcacctcctcctctgccgccaaggtcaaaacaaaacaactgtgct
gaatgcccacaaggcgattttgacaagatcaagaacaagttgctgcagggcaacgtggtg
tatcgtgcacaccacctcggtgttctggaaattggagaaaccgaatgctctgatgaagct
catgcagctatgacaagaatcaaagagtcgataattgactgggagactattccacgggtt
actttggatttgacttgcaatggaatcactatcttcgatgaaacttttaagggaattgcc
gcagaaatcatcaccacaatcggaatgatgtttgagctcagaagcagaatggacaagtct
ctgccaatcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACATTTCCAACTTTGTCGGTGCAG 382 645 2779 Antisense
TTGATGCAACTCGGTGTTACTCGTC 213 681 2854 Antisense
TCGTCCTGGTCACATTGCTAGAATG 598 603 2874 Antisense
ATTAAGCCATTAATGTCACCTCCTC 169 13 2959 Antisense
TCCTCTGCCGCCAAGGTCAAAACAA 430 593 2982 Antisense
AACTGTGCTGAATGCCCACAAGGCG 575 141 3010 Antisense
AGGGCAACGTGGTGTATCGTGCACA 238 57 3065 Antisense
CACCACCTCGGTGTTCTGGAAATTG 694 201 3088 Antisense
GGAGACTATTCCACGGGTTACTTTG 423 515 3180 Antisense
GAATTGCCGCAGAAATCATCACCAC 28 325 3251 Antisense
GAATGGACAAGTCTCTGCCAATCGA 53 333 3305 Antisense
Sequence Source Affymetrix Proprietary Database