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[189234_at] serine esterase

Description E01G6.3 /REP_DB=WormBase Gene ID /WP=CE09114 /TR=O17592 /GB=CAB01683.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=serine esterase
Cluster 6grp_high1_10_10 > 72      6grp_total > 73      4grp_total > 60      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 104.9
(1.5)
P 		128
(2.7)
P 		133.3
(3)
P 		20.3
(-3)
A 		113
B 171.8
(3)
P 		165.8
(2.8)
P 		114.4
(0.9)
P 		11.3
(-3)
A 		161
C 144.6
(3)
P 		114.2
(0)
A 		136.2
(2.2)
P 		83
(-3)
A 		62
avr 140.4
(3) 		136
(2.7) 		128
(2.3) 		38.2
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 84.8
(-3)
A 		118.2
(-1.5)
P 		190.9
(1.7)
P 		221.6
(3)
P 		192.4
(1.7)
P 		134.3
(-0.8)
P 		137
B 72.8
(-3)
P 		133.3
(0)
P 		163.4
(1.5)
P 		193.3
(3)
P 		185.1
(2.6)
P 		149.6
(0.8)
P 		121
C 100.8
(-3)
P 		130.9
(-1.4)
P 		204.5
(2.6)
P 		212.8
(3)
P 		133.6
(-1.2)
P 		132.8
(-1.3)
P 		112
avr 86.1
(-3) 		127.5
(-1) 		186.3
(1.9) 		209.2
(3) 		170.4
(1.1) 		138.9
(-0.4) 		123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 38.2
(3)
P 		27.8
(1.2)
P 		34.8
(2.4)
P 		3
(-3)
A 		35
B 54.8
(3)
P 		41
(1.4)
P 		26.5
(-0.2)
P 		2.4
(-3)
A 		52
C 47.9
(3)
P 		32.8
(0.3)
A 		47.5
(2.9)
P 		14
(-3)
A 		34
avr 47
(3) 		33.9
(1.1) 		36.3
(1.4) 		6.5
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 15.6
(-3)
A 		42
(0.7)
P 		41.6
(0.7)
P 		56.2
(2.7)
P 		58.1
(3)
P 		32.7
(-0.6)
P 		43
B 25.3
(-3)
P 		44.4
(-0.7)
P 		39.7
(-1.3)
P 		51.2
(0.1)
P 		75.2
(3)
P 		55.8
(0.7)
P 		50
C 37.4
(-3)
P 		39.9
(-2)
P 		52.1
(3)
P 		42.8
(-0.8)
P 		43.2
(-0.6)
P 		44.5
(-0.1)
P 		15
avr 26.1
(-3) 		42.1
(-0.1) 		44.5
(0.4) 		50.1
(1.4) 		58.8
(3) 		44.3
(0.3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189234_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16217
Sequence Type Exemplar sequence
Representative Public ID E01G6.3 NCBI
Target Description E01G6.3 /REP_DB=WormBase Gene ID /WP=CE09114 /TR=O17592 /GB=CAB01683.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=serine esterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077641(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077641 NCBI Caenorhabditis elegans E01G6.3 (E01G6.3) mRNA, complete cds. 11/11 None
SNAP00000024772 ENSEMBL cdna:SNAP chromosome:CEL140:X:12242968:12244396:1 11/11 None
E01G6.3 ENSEMBL cdna:known chromosome:CEL140:X:12241432:12244558:1 gene:E01G6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000024782 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12241431-12244396(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine esterase
Ensembl E01G6.3
Entrez Gene 181385 Entrez gene
SwissProt O17592 EMBL-EBI
WormBase CE09114 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01683 Hypothetical protein E01G6.3 [Caenorhabditis elegans] emb|CAA93533.1| Hypothetical protein E01G6.3 [Caenorhabditis elegans] ref|NP_510042.1| E01G6.3 [Caenorhabditis elegans] 0.0
blast CAB01683 Hypothetical protein E01G6.3 [Caenorhabditis elegans] emb|CAA93533.1| Hypothetical protein E01G6.3 [Caenorhabditis elegans] ref|NP_510042.1| E01G6.3 [Caenorhabditis elegans] 1.0E-140
blast CAE69911 Hypothetical protein CBG16267 [Caenorhabditis briggsae] 1.0E-123
blast CAB01678 Hypothetical protein C23H4.4 [Caenorhabditis elegans] ref|NP_510039.2| C23H4.4 [Caenorhabditis elegans] 1.0E-101
blast CAB01677 Hypothetical protein C23H4.2 [Caenorhabditis elegans] ref|NP_510037.1| C23H4.2 [Caenorhabditis elegans] 1.0E-91
blast CAE69912 Hypothetical protein CBG16268 [Caenorhabditis briggsae] 8.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 4.4E-90
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 6.9E-8
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 5.1E-4
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 6.9E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510042.1 3 10-32,163-182,492-511
E01G6.3 3 10-32,163-182,492-511
SNAP00000024772 1 304-323
Sequence
Target Sequence 
>C. ELEGANS:189234_AT
atttgtgtcgactgcgacgtacgccgaagcccaagcaaatgctggcggtactgtgtatct
ctttcaatcaaaccaacaaccatcttctcatgtgtcggatatgcagtattttgtcggaac
tcacagagaggactatcacacatctgacatggacatcatggatacgttttattcaaaaat
gatagtgaattttacaaagtttgggagtccgtcaccggtgtgggaaccactggtgccttc
aagaatgaactactacgccttggaggtcaacactgaaaaaggaatctggccgagaatgga
agaagattttcatgaatcagatgtcaacttttggttcatcaacatgacggcgtttgacag
agaagtgacgagacagaagaaaacatcgaacgggaccagtttgacgtggagccctatgca
tcccggtcccgttattctaccaacaaaaacaaatgaatcatcatcgtttgacatatcctc
gcaatggtggtttttcgcaattattgtcgtggtagcccttattttattctacctgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTGTGTCGACTGCGACGTACGCC 503 15 1002 Antisense
GTACGCCGAAGCCCAAGCAAATGCT 633 457 1020 Antisense
TGGCGGTACTGTGTATCTCTTTCAA 149 545 1044 Antisense
AACCATCTTCTCATGTGTCGGATAT 519 147 1079 Antisense
TGTGGGAACCACTGGTGCCTTCAAG 622 553 1220 Antisense
AATGAACTACTACGCCTTGGAGGTC 303 151 1245 Antisense
GGGACCAGTTTGACGTGGAGCCCTA 534 493 1393 Antisense
CATCATCGTTTGACATATCCTCGCA 204 213 1460 Antisense
ATCCTCGCAATGGTGGTTTTTCGCA 570 39 1476 Antisense
AATTATTGTCGTGGTAGCCCTTATT 515 173 1500 Antisense
AGCCCTTATTTTATTCTACCTGATT 242 83 1515 Antisense
Sequence Source Affymetrix Proprietary Database