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[189232_at] 7TM chemoreceptor, str family

Description C45H4.12 /REP_DB=WormBase Gene ID /WP=CE17553 /TR=O44691 /GB=AAC25883.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 52      4grp_total > 20      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 43.5
(-2.1)
P 		54.3
(3)
A 		41.5
(-3)
A 		54.2
(3)
A 		13
B 36.1
(-0.3)
A 		38.8
(0.6)
P 		27.7
(-3)
A 		46.1
(3)
A 		18
C 66.1
(2.1)
A 		45.6
(-1.2)
P 		34.8
(-3)
A 		71.6
(3)
P 		37
avr 48.6
(0.7) 		46.2
(0.1) 		34.7
(-3) 		57.3
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 29.4
(0.5)
A 		5.2
(-3)
A 		37
(1.6)
A 		46.6
(3)
A 		37.5
(1.7)
A 		23.8
(-0.3)
A 		41
B 21.1
(-3)
A 		39.7
(1.2)
A 		47.4
(3)
A 		29.7
(-1)
A 		23.4
(-2.5)
A 		25.4
(-2)
A 		26
C 26.2
(0.3)
A 		21.8
(-0.3)
A 		46
(3)
A 		5.2
(-2.6)
A 		46.1
(3)
P 		2
(-3)
A 		44
avr 25.6
(-1.1) 		22.2
(-1.8) 		43.5
(3) 		27.2
(-0.7) 		35.7
(1.2) 		17.1
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 15.8
(3)
P 		11.8
(-0)
A 		10.8
(-0.8)
A 		7.9
(-3)
A 		8
B 11.5
(3)
A 		9.6
(0.8)
P 		6.4
(-3)
A 		9.8
(1)
A 		5
C 21.9
(3)
A 		13.1
(-2.4)
P 		12.1
(-3)
A 		12.1
(-3)
P 		10
avr 16.4
(3) 		11.5
(-1.5) 		9.8
(-3) 		9.9
(-2.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5.4
(-0.9)
A 		1.9
(-3)
A 		8
(0.7)
A 		11.8
(3)
A 		11.3
(2.7)
A 		5.8
(-0.6)
A 		10
B 7.3
(-3)
A 		13.2
(3)
A 		11.5
(1.3)
A 		7.9
(-2.4)
A 		9.5
(-0.8)
A 		9.5
(-0.8)
A 		6
C 9.7
(0.8)
A 		6.6
(-0.5)
A 		11.7
(1.6)
A 		1
(-2.9)
A 		14.9
(3)
P 		0.7
(-3)
A 		14
avr 7.5
(-1) 		7.2
(-1.3) 		10.4
(1.6) 		6.9
(-1.5) 		11.9
(3) 		5.3
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189232_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15510
Sequence Type Exemplar sequence
Representative Public ID C45H4.12 NCBI
Target Description C45H4.12 /REP_DB=WormBase Gene ID /WP=CE17553 /TR=O44691 /GB=AAC25883.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071178(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071178 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-52) (str-52) mRNA, complete cds. 11/11 None
C45H4.12 ENSEMBL cdna:known chromosome:CEL140:V:2143848:2145972:-1 gene:C45H4.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009337 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2143847-2145972(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-52
Ensembl C45H4.12
Entrez Gene 183493 Entrez gene
SwissProt O44691 EMBL-EBI
WormBase CE17553 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25883 Seven tm receptor protein 52 [Caenorhabditis elegans] ref|NP_503579.1| Seven TM Receptor family member (str-52) [Caenorhabditis elegans] 0.0
blast T32201 hypothetical protein T02B11.2 - Caenorhabditis elegans 1.0E-101
blast CAE73895 Hypothetical protein CBG21495 [Caenorhabditis briggsae] 3.0E-75
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503579.1 7 10-32,39-61,85-107,128-150,195-217,244-266,281-303
C45H4.12 7 10-32,39-61,85-107,128-150,195-217,244-266,281-303
Sequence
Target Sequence 
>C. ELEGANS:189232_AT
gcactttacttgagctctttttatttgttttgtcaacctgaccagtttggcgatgattat
gtcaaggaagagattctgaagagatatgagctcgatatcaaaagtgctcctcgtttttta
ataatatccttgaatcctgatggctcgtttagatggaaaaatatgagccttctcctccac
gggcttgcactaattgcagtccattatttggcgatagtctatttcggtgtccaaatgagt
cggcatatgaagcaaaaacttcaaaacttctcagcaacctatcaacgacttcaacaacaa
ttttttcgagctctaattgttcaaacgttggctccgacatttctttatgtcctgccagct
gggcctgtgctccttgctccattattatcaccgttgctcggtttcaatattagtatgcag
actggtttggtttgcactgtatttacactttactcgccatttgatagtatagcgtttatg
gttattgtttcagagtatcggaaaataattcaaaagcagcttactagaacttacccagtt
ccccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACTTTACTTGAGCTCTTTTTATT 151 315 433 Antisense
GTCAACCTGACCAGTTTGGCGATGA 355 463 464 Antisense
GAAAAATATGAGCCTTCTCCTCCAC 552 355 588 Antisense
GGCGATAGTCTATTTCGGTGTCCAA 495 541 642 Antisense
ACTTCTCAGCAACCTATCAACGACT 617 103 698 Antisense
ATTGTTCAAACGTTGGCTCCGACAT 451 3 748 Antisense
GACATTTCTTTATGTCCTGCCAGCT 195 371 768 Antisense
CCTTGCTCCATTATTATCACCGTTG 494 269 804 Antisense
GACTGGTTTGGTTTGCACTGTATTT 676 375 852 Antisense
ATTTACACTTTACTCGCCATTTGAT 555 15 873 Antisense
TACTAGAACTTACCCAGTTCCCCAT 497 639 954 Antisense
Sequence Source Affymetrix Proprietary Database