[Home] | [Total List]

[189228_at] carboxyesterase

Description C23H4.3 /REP_DB=WormBase Gene ID /WP=CE08329 /TR=Q93254 /GB=CAB01680.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=carboxyesterase
Cluster 6grp_high1_10_10 > 42      4grp_high_8_8 > 47      6grp_total > 30      4grp_total > 57      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 42.3
(-1.3)
P 		86.4
(1.8)
P 		103.3
(3)
P 		18.7
(-3)
A 		85
B 56.9
(1.8)
P 		49.1
(0.8)
P 		66.7
(3)
P 		19.5
(-3)
A 		47
C 54.3
(-3)
A 		73.4
(-0.1)
P 		94.5
(3)
P 		58.2
(-2.4)
P 		40
avr 51.2
(-1) 		69.6
(1) 		88.2
(3) 		32.1
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 56.8
(-0.7)
P 		72.2
(0.4)
P 		110.5
(3)
P 		83.8
(1.2)
P 		48.1
(-1.3)
P 		23.7
(-3)
A 		87
B 41.2
(-3)
P 		76.5
(0.4)
P 		102.9
(3)
P 		75.1
(0.3)
P 		73.3
(0.1)
P 		49.8
(-2.2)
P 		62
C 64.1
(-0.2)
P 		92.8
(3)
P 		49.2
(-1.9)
P 		56
(-1.1)
P 		65.3
(-0.1)
P 		39.5
(-3)
P 		53
avr 54
(-1) 		80.5
(2.2) 		87.5
(3) 		71.6
(1.1) 		62.2
(-0) 		37.7
(-3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 15.4
(0.1)
P 		18.8
(1)
P 		27
(3)
P 		2.7
(-3)
A 		24
B 18.1
(3)
P 		12.1
(0.4)
P 		15.4
(1.8)
P 		4.2
(-3)
A 		14
C 18
(-0.9)
A 		21.1
(-0.1)
P 		32.9
(3)
P 		9.8
(-3)
P 		23
avr 17.2
(0.6) 		17.3
(0.6) 		25.1
(3) 		5.6
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 10.5
(-1.6)
P 		25.7
(3)
P 		24.1
(2.5)
P 		21.3
(1.7)
P 		14.5
(-0.4)
P 		5.8
(-3)
A 		20
B 14.3
(-3)
P 		25.5
(1.3)
P 		25
(1.1)
P 		19.9
(-0.8)
P 		29.8
(3)
P 		18.6
(-1.3)
P 		16
C 23.8
(1.4)
P 		28.3
(3)
P 		12.5
(-2.6)
P 		11.3
(-3)
P 		21.1
(0.5)
P 		13.2
(-2.3)
P 		17
avr 16.2
(-1.4) 		26.5
(3) 		20.5
(0.4) 		17.5
(-0.9) 		21.8
(1) 		12.5
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189228_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16775
Sequence Type Exemplar sequence
Representative Public ID C23H4.3 NCBI
Target Description C23H4.3 /REP_DB=WormBase Gene ID /WP=CE08329 /TR=Q93254 /GB=CAB01680.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=carboxyesterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077637(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077637 NCBI Caenorhabditis elegans C23H4.3 (carboxyesterase) mRNA, complete cds. 9/11 None
GENEFINDER00000004848 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12219631:12233363:1 9/11 None
SNAP00000004842 ENSEMBL cdna:SNAP chromosome:CEL140:X:12227711:12229761:1 9/11 None
C23H4.3 ENSEMBL cdna:known chromosome:CEL140:X:12226124:12229782:1 gene:C23H4.3 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12222922-12229096(+) 97.84 100.0
Public Domain and Genome References
Gene Title carboxyesterase
Ensembl C23H4.3
Entrez Gene 181383 Entrez gene
SwissProt Q93254 EMBL-EBI
WormBase CE31418 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01680 Hypothetical protein C23H4.3 [Caenorhabditis elegans] ref|NP_510038.2| C23H4.3 [Caenorhabditis elegans] 0.0
blast CAD44098 Hypothetical protein C23H4.7 [Caenorhabditis elegans] ref|NP_741910.1| C23H4.7 [Caenorhabditis elegans] 0.0
blast CAE69912 Hypothetical protein CBG16268 [Caenorhabditis briggsae] 0.0
blast CAB01678 Hypothetical protein C23H4.4 [Caenorhabditis elegans] ref|NP_510039.2| C23H4.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 2.6E-116
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 5.4E-95
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 7.3E-83
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 6.0E-7
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 8.3E-82
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 2.3E-86
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 7.4E-7
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 3.3E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510038.2 1 598-617
C23H4.3 1 598-617
GENEFINDER00000004848 1 2144-2161
SNAP00000004842 1 350-369
Sequence
Target Sequence 
>C. ELEGANS:189228_AT
gatgcagctgcaattttcatatgtgcttcaacattttcgactgcaatggcaaatactgga
gctgatgtgtatctttttgaaacccgacaaaaaccgtatagtttccatgtatctgatatg
caatattttgttgggattcatcgagaaatttatcatagacctgacatggatattttggat
actttttattctaaactgctcgtgaattttacaaaaatgggagtgccatctccagaatgg
gcaccacttgaccccgaaagaatgaactatctagagctaaaggtagattctgacatgaaa
gaaggaccagttatgcttgaaggttttcacgaaaaagaaatggaactgtggtttggagaa
atgatggaatttgacagaaatgttacaaaaatagtgagaattttaattttttttgaagtc
aaatttgcgttgaaaacttctaaaagtgctaaaaatcagatgtgtaaatttctcgatatc
ggaaaacttggcaaatatgtatattttttttcatatttttcggcacgtcaaatcgcaaat
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCAGCTGCAATTTTCATATGTG 151 413 2977 Antisense
TCATATGTGCTTCAACATTTTCGAC 580 619 2993 Antisense
GCAATGGCAAATACTGGAGCTGATG 207 321 3019 Antisense
CTGATGTGTATCTTTTTGAAACCCG 219 239 3038 Antisense
AACCGTATAGTTTCCATGTATCTGA 477 147 3068 Antisense
GATACTTTTTATTCTAAACTGCTCG 274 421 3154 Antisense
GGGAGTGCCATCTCCAGAATGGGCA 171 495 3195 Antisense
TCCAGAATGGGCACCACTTGACCCC 37 587 3207 Antisense
CACCACTTGACCCCGAAAGAATGAA 99 203 3218 Antisense
TTTTTCATATTTTTCGGCACGTCAA 14 675 3483 Antisense
TTTCGGCACGTCAAATCGCAAATTT 119 669 3494 Antisense
Sequence Source Affymetrix Proprietary Database