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[189226_at] 7TM chemoreceptor, sri family

Description F34D6.6 /REP_DB=WormBase Gene ID /WP=CE25870 /GEN=sri-61 /GB=AAK68371.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 53      4grp_total > 0      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 27.6
(-1.5)
A 		9.2
(-3)
A 		33.6
(-1)
A 		83.5
(3)
A 		74
B 45.4
(1.4)
A 		56.2
(3)
A 		36.3
(0)
A 		16.1
(-3)
A 		40
C 19.5
(-3)
A 		24
(-2.2)
A 		36.4
(-0.1)
A 		55
(3)
A 		36
avr 30.8
(-2.7) 		29.8
(-3) 		35.4
(-1.5) 		51.5
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 21.3
(-1.3)
A 		7.5
(-3)
A 		55.9
(3)
A 		26.2
(-0.7)
A 		31.7
(0)
A 		36.8
(0.6)
A 		48
B 30.9
(-0.2)
A 		36.3
(0.5)
A 		57.5
(3)
A 		15.8
(-2)
A 		37.6
(0.6)
A 		7.2
(-3)
A 		50
C 18.7
(-3)
A 		24.8
(-2.2)
A 		66
(3)
M 		38.2
(-0.5)
A 		22.7
(-2.5)
A 		31.9
(-1.3)
A 		47
avr 23.6
(-2.9) 		22.9
(-3) 		59.8
(3) 		26.7
(-2.4) 		30.7
(-1.7) 		25.3
(-2.6) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 10
(1.7)
A 		2
(-3)
A 		8.8
(1)
A 		12.2
(3)
A 		10
B 14.5
(3)
A 		13.9
(2.7)
A 		8.4
(-0.3)
A 		3.4
(-3)
A 		11
C 6.5
(-3)
A 		6.9
(-2.6)
A 		12.7
(3)
A 		9.3
(-0.3)
A 		6
avr 10.3
(3) 		7.6
(-3) 		10
(2.3) 		8.3
(-1.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3.9
(-2.2)
A 		2.7
(-3)
A 		12.2
(3)
A 		6.6
(-0.5)
A 		9.6
(1.4)
A 		9
(1)
A 		10
B 10.7
(0.8)
A 		12.1
(1.5)
A 		14
(2.4)
A 		4.2
(-2.3)
A 		15.3
(3)
A 		2.7
(-3)
A 		13
C 6.9
(-3)
A 		7.6
(-2.6)
A 		16.8
(3)
M 		7.7
(-2.5)
A 		7.4
(-2.7)
A 		10.7
(-0.7)
A 		10
avr 7.2
(-2.3) 		7.5
(-2) 		14.3
(3) 		6.2
(-3) 		10.8
(0.4) 		7.5
(-2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189226_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4360
Sequence Type Exemplar sequence
Representative Public ID F34D6.6 NCBI
Target Description F34D6.6 /REP_DB=WormBase Gene ID /WP=CE25870 /GEN=sri-61 /GB=AAK68371.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061935(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061935 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-61) (sri-61) mRNA, complete cds. 11/11 None
SNAP00000016794 ENSEMBL cdna:SNAP chromosome:CEL140:II:2698865:2699747:-1 11/11 None
F34D6.6 ENSEMBL cdna:known chromosome:CEL140:II:2698865:2700329:-1 gene:F34D6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2698863-2700328(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-61
Ensembl F34D6.6
Entrez Gene 191925 Entrez gene
SwissProt Q965L6 EMBL-EBI
WormBase CE25870 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68371 Serpentine receptor, class i protein 61 [Caenorhabditis elegans] ref|NP_494336.1| Serpentine Receptor, class I family member (sri-61) [Caenorhabditis elegans] 0.0
blast T33560 hypothetical protein F34D6.5 - Caenorhabditis elegans 0.0
blast AAK68370 Serpentine receptor, class i protein 62 [Caenorhabditis elegans] ref|NP_494335.1| Serpentine Receptor, class I family member (sri-62) [Caenorhabditis elegans] 1.0E-146
blast AAK68371 Serpentine receptor, class i protein 61 [Caenorhabditis elegans] ref|NP_494336.1| Serpentine Receptor, class I family member (sri-61) [Caenorhabditis elegans] 1.0E-125
blast T33560 hypothetical protein F34D6.5 - Caenorhabditis elegans 1.0E-122
blast AAK68370 Serpentine receptor, class i protein 62 [Caenorhabditis elegans] ref|NP_494335.1| Serpentine Receptor, class I family member (sri-62) [Caenorhabditis elegans] 6.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.1E-32
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.0E-80
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494336.1 7 15-37,46-68,88-110,131-153,195-217,238-267,277-299
F34D6.6 7 15-37,46-68,88-110,131-153,195-217,238-267,277-299
SNAP00000016794 4 24-46,88-110,131-160,170-192
Sequence
Target Sequence 
>C. ELEGANS:189226_AT
gtgggtggtttggtgcgtattaggattttttattgtttatatctgtgcggttgttggatt
attctcacagactcgcagagatgagatgcatcaaatggagtatattagagtgaacctacc
tgagtacctccccggctttaaaagtctcccgaacttctccatctacgaactcgacgcata
ctttatgggcacagtggggttcgcagcagccttcgggcctgttgtattttccttgtggtg
ctttgtcttggctaatatattccgaatgctttcactattgaaatctcaaatctctgcctc
aaactatcgaaaacatcgagccgccatctggagcctcctggctcaattcgccacgtcatt
ggtctgtatcataccgcccatctgtttcgtgttcgtcgtgctgatagggatcgatggagc
gcaggtaatcgtcgagtatctcctagtcatcgcctgcttgcactcctccctaaatgttac
agtactaattttgacgttcccgccgtataggaaatatgtcttctcattgataaagcggca
aaaaaaagctgcaagaaccggagtgtcagtgcgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGGTGGTTTGGTGCGTATTAGGA 555 477 402 Antisense
GTTGGATTATTCTCACAGACTCGCA 645 435 454 Antisense
AGAGTGAACCTACCTGAGTACCTCC 404 67 508 Antisense
CCATCTACGAACTCGACGCATACTT 158 269 560 Antisense
TATGGGCACAGTGGGGTTCGCAGCA 11 657 585 Antisense
GGCCTGTTGTATTTTCCTTGTGGTG 589 541 617 Antisense
CCTTGTGGTGCTTTGTCTTGGCTAA 122 269 632 Antisense
ATTCGCCACGTCATTGGTCTGTATC 255 9 747 Antisense
TCGTCGAGTATCTCCTAGTCATCGC 542 603 830 Antisense
GCACTCCTCCCTAAATGTTACAGTA 205 315 861 Antisense
CAAGAACCGGAGTGTCAGTGCGATC 576 185 953 Antisense
Sequence Source Affymetrix Proprietary Database